Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90210175..90212075-chr5:90662640..90664980,2	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10035662	0.91[EUR][1000 genomes]
rs10052015	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs10060641	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs10078496	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs10474336	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs12054681	0.84[CEU][hapmap];0.90[EUR][1000 genomes]
rs12513628	0.88[EUR][1000 genomes]
rs12515473	0.89[EUR][1000 genomes]
rs12515481	0.80[EUR][1000 genomes]
rs12520956	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs12522395	0.88[CEU][hapmap];0.91[EUR][1000 genomes]
rs17556421	0.90[EUR][1000 genomes]
rs1876633	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2063245	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs28368305	0.80[EUR][1000 genomes]
rs3105791	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3105792	0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs3114652	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3114654	0.91[ASN][1000 genomes]
rs36131676	0.90[ASN][1000 genomes]
rs4916696	0.87[ASN][1000 genomes]
rs4916697	0.91[ASN][1000 genomes]
rs4916831	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs4916832	0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs56908576	0.89[EUR][1000 genomes]
rs6878896	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs7724016	0.88[CEU][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv2754394	chr5:90181320-90225796	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90185000-90226600	Weak transcription	K562	blood
2	chr5:90186400-90218000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:90205000-90225000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:90205200-90217600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:90205200-90219200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:90207400-90212800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:90208000-90231000	Weak transcription	Brain Anterior Caudate	brain
8	chr5:90208200-90213400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:90208600-90217400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:90210600-90211800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:90211200-90211800	Enhancers	Fetal Kidney	kidney
12	chr5:90211200-90211800	Flanking Active TSS	A549	lung
13	chr5:90211400-90217600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr5:90211600-90212000	Flanking Active TSS	Liver	Liver
15	chr5:90211600-90212200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr5:90211600-90212200	Enhancers	HepG2	liver
17	chr5:90211600-90212800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:90211600-90225000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:90211600-90225000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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