Variant report

Variant	rs10079460
Chromosome Location	chr5:42857451-42857452
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10045120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10053691	1.00[AMR][1000 genomes]
rs10078817	1.00[AMR][1000 genomes]
rs13358131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7737177	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
4	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
5	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
6	nsv523033	chr5:42752037-42919685	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv965602	chr5:42767568-42889585	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
9	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
10	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
11	nsv1018276	chr5:42809131-42975245	Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42851400-42858400	Enhancers	HepG2	liver
2	chr5:42853200-42858400	Enhancers	Brain Substantia Nigra	brain
3	chr5:42853400-42858400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:42854000-42857800	Enhancers	Brain Hippocampus Middle	brain
5	chr5:42854200-42858400	Weak transcription	K562	blood
6	chr5:42855000-42857800	Enhancers	Brain Angular Gyrus	brain
7	chr5:42855000-42858400	Enhancers	Brain Anterior Caudate	brain
8	chr5:42855000-42859200	Enhancers	HSMM	muscle
9	chr5:42855200-42858200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:42855200-42859600	Enhancers	Fetal Intestine Large	intestine
11	chr5:42855600-42858200	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr5:42855800-42858200	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr5:42855800-42858400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:42855800-42858800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr5:42856000-42858200	Weak transcription	HSMMtube	muscle
16	chr5:42856200-42857600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:42856200-42858200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:42856200-42858200	Weak transcription	Osteobl	bone
19	chr5:42856200-42858400	Weak transcription	Psoas Muscle	Psoas
20	chr5:42856200-42858400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:42856600-42858400	Weak transcription	Liver	Liver
22	chr5:42856800-42857600	Weak transcription	Fetal Intestine Small	intestine
23	chr5:42857000-42858400	Weak transcription	Fetal Lung	lung
24	chr5:42857200-42857600	Enhancers	Left Ventricle	heart
25	chr5:42857200-42857800	Enhancers	Fetal Heart	heart
26	chr5:42857200-42858400	Enhancers	Brain Cingulate Gyrus	brain
27	chr5:42857400-42858400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr5:42857400-42858400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:42857400-42858400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:42857400-42859200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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