Variant report

Variant	rs10079834
Chromosome Location	chr5:177622349-177622350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177617264..177619059-chr5:177621783..177623685,3	K562	blood:
2	chr5:177621142..177624086-chr5:177625603..177628449,4	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10074929	0.84[AFR][1000 genomes]
rs10079902	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
3	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
4	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
5	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
6	nsv1021981	chr5:177620372-177825272	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases
7	nsv537967	chr5:177620372-177825272	Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177620000-177622600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:177620600-177623200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:177621000-177624000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:177621200-177626600	Weak transcription	Esophagus	oesophagus
5	chr5:177621400-177622400	Enhancers	Liver	Liver
6	chr5:177621400-177622400	Bivalent Enhancer	HepG2	liver
7	chr5:177621400-177626600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr5:177621600-177623200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:177621600-177625800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:177621600-177630800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:177621800-177623000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:177621800-177623000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:177621800-177623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:177621800-177625600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:177622000-177623400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr5:177622000-177625800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr5:177622200-177622800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:177622200-177625400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr5:177622200-177625400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:177622200-177630200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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