Variant report

Variant	rs10080086
Chromosome Location	chr5:95267025-95267026
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95261849..95263612-chr5:95264702..95267235,2	MCF-7	breast:
2	chr5:95265302..95267698-chr5:95294461..95297744,3	K562	blood:
3	chr5:95265302..95267698-chr5:95294461..95296344,2	K562	blood:
4	chr5:95265684..95268573-chr5:95280792..95282452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251314	Chromatin interaction
ENSG00000118985	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73139802	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015180	chr5:95134357-95286446	Strong transcription Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1019566	chr5:95180352-95300677	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	esv2758003	chr5:95231706-95540433	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	esv2759355	chr5:95231706-95540433	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95236400-95276600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:95238200-95282000	Weak transcription	HUVEC	blood vessel
3	chr5:95243400-95278800	Weak transcription	Lung	lung
4	chr5:95243600-95274200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:95249800-95271600	Weak transcription	NH-A	brain
6	chr5:95252200-95272400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:95253800-95272400	Weak transcription	Placenta	Placenta
8	chr5:95257400-95276600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:95259400-95271400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:95259400-95271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:95259400-95273400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:95259400-95274600	Weak transcription	Psoas Muscle	Psoas
13	chr5:95259800-95270000	Weak transcription	Right Ventricle	heart
14	chr5:95260000-95272200	Weak transcription	Left Ventricle	heart
15	chr5:95260000-95280600	Weak transcription	Esophagus	oesophagus
16	chr5:95260800-95273400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:95260800-95295200	Weak transcription	Primary T cells from cord blood	blood
18	chr5:95261600-95271200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:95261800-95271600	Weak transcription	Adipose Nuclei	Adipose
20	chr5:95262200-95272400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:95262200-95295400	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:95262600-95271400	Weak transcription	Primary B cells from cord blood	blood
23	chr5:95263800-95278400	Weak transcription	Colonic Mucosa	Colon
24	chr5:95264200-95268600	Strong transcription	HSMM	muscle
25	chr5:95264200-95269200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:95264200-95271600	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:95264600-95267200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr5:95264800-95272400	Weak transcription	Stomach Mucosa	stomach
29	chr5:95264800-95275200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr5:95264800-95276000	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:95264800-95279800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:95264800-95285600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr5:95264800-95293800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr5:95265000-95267800	Weak transcription	Fetal Intestine Large	intestine
35	chr5:95265000-95268200	Enhancers	Dnd41	blood
36	chr5:95265000-95270000	Weak transcription	Fetal Intestine Small	intestine
37	chr5:95265000-95270000	Weak transcription	Ovary	ovary
38	chr5:95265000-95270000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr5:95265000-95272200	Weak transcription	Gastric	stomach
40	chr5:95265000-95272200	Weak transcription	Pancreas	Pancrea
41	chr5:95265000-95285600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr5:95265400-95270200	Enhancers	Brain Cingulate Gyrus	brain
43	chr5:95265400-95281800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:95265600-95268200	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr5:95265800-95267200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr5:95265800-95267400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:95265800-95267400	Enhancers	Brain Anterior Caudate	brain
48	chr5:95265800-95267600	Genic enhancers	Osteobl	bone
49	chr5:95265800-95268200	Genic enhancers	Liver	Liver
50	chr5:95265800-95270400	Enhancers	Brain Substantia Nigra	brain

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