Variant report

Variant	rs10080954
Chromosome Location	chr6:141803708-141803709
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141797797..141799874-chr6:141802177..141804106,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10080835	1.00[AMR][1000 genomes]
rs58606500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7740755	1.00[AMR][1000 genomes]
rs9484513	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496034	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496041	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9496042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496046	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141802800-141803800	Enhancers	Primary B cells from cord blood	blood
2	chr6:141802800-141803800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr6:141803000-141803800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:141803000-141803800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:141803000-141803800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:141803000-141803800	Enhancers	Brain Germinal Matrix	brain
7	chr6:141803000-141803800	Enhancers	NHDF-Ad	bronchial
8	chr6:141803000-141804000	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:141803000-141804000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr6:141803200-141803800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:141803200-141803800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:141803200-141803800	Enhancers	Dnd41	blood
13	chr6:141803200-141803800	Enhancers	Osteobl	bone
14	chr6:141803200-141804000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:141803400-141804000	Enhancers	Primary T cells from cord blood	blood
16	chr6:141803400-141804200	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:141803400-141804600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:141803600-141803800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:141803600-141803800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:141803600-141803800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:141803600-141804000	Enhancers	Primary T helper cells fromperipheralblood	blood

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