Variant report

Variant	rs10081018
Chromosome Location	chr6:13734519-13734520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13676682..13679479-chr6:13733229..13734919,2	K562	blood:
2	chr6:13732101..13734946-chr6:13735634..13737792,2	K562	blood:
3	chr6:13721713..13725590-chr6:13730515..13734730,4	K562	blood:
4	chr6:13733229..13735701-chr6:13742601..13744211,2	MCF-7	breast:
5	chr6:13733063..13736009-chr6:13738109..13740804,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10080434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13732400-13734600	Enhancers	Fetal Heart	heart
2	chr6:13733000-13736400	Enhancers	Placenta	Placenta
3	chr6:13733200-13734600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:13733200-13735000	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:13733600-13737400	Enhancers	Fetal Brain Male	brain
6	chr6:13733800-13734600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:13733800-13734600	Bivalent Enhancer	HepG2	liver
8	chr6:13733800-13734800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:13733800-13734800	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr6:13733800-13736000	Weak transcription	Right Atrium	heart
11	chr6:13734000-13734600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr6:13734000-13734600	Enhancers	Fetal Muscle Leg	muscle
13	chr6:13734000-13734600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:13734000-13734800	Enhancers	Fetal Brain Female	brain
15	chr6:13734000-13735000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:13734000-13735800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr6:13734000-13736000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:13734200-13734600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:13734200-13734600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr6:13734200-13735200	Enhancers	Ovary	ovary
21	chr6:13734200-13735400	Enhancers	Adipose Nuclei	Adipose
22	chr6:13734200-13736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:13734200-13736000	Weak transcription	Osteobl	bone
24	chr6:13734200-13736600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:13734200-13736800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:13734400-13734600	Enhancers	Psoas Muscle	Psoas

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