Variant report

Variant	rs10081498
Chromosome Location	chr8:8926691-8926692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8923613..8925137-chr8:8925154..8926836,2	K562	blood:
2	chr8:8924114..8927396-chr8:9007431..9009009,3	MCF-7	breast:
3	chr8:8925374..8928115-chr8:9014387..9016953,2	MCF-7	breast:
4	chr8:8922328..8927101-chr8:9005412..9009075,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173281	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10081588	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095271	0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10105124	1.00[EUR][1000 genomes]
rs10106701	1.00[JPT][hapmap]
rs17155175	1.00[EUR][1000 genomes]
rs28482415	1.00[EUR][1000 genomes]
rs57395617	1.00[EUR][1000 genomes]
rs57859383	1.00[EUR][1000 genomes]
rs57935527	1.00[EUR][1000 genomes]
rs59021004	1.00[EUR][1000 genomes]
rs61648635	1.00[EUR][1000 genomes]
rs73520791	1.00[EUR][1000 genomes]
rs73520793	1.00[EUR][1000 genomes]
rs73520798	1.00[EUR][1000 genomes]
rs73522703	1.00[EUR][1000 genomes]
rs73522713	1.00[EUR][1000 genomes]
rs73522718	1.00[EUR][1000 genomes]
rs73526352	1.00[EUR][1000 genomes]
rs73526355	1.00[EUR][1000 genomes]
rs73526356	1.00[EUR][1000 genomes]
rs73526377	1.00[EUR][1000 genomes]
rs73526398	1.00[EUR][1000 genomes]
rs73528107	1.00[EUR][1000 genomes]
rs73528109	1.00[EUR][1000 genomes]
rs920973	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8915400-8928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:8916000-8935200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:8923800-8927000	Weak transcription	NHDF-Ad	bronchial
4	chr8:8923800-8927200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:8923800-8927800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:8923800-8927800	Weak transcription	Adipose Nuclei	Adipose
7	chr8:8923800-8927800	Weak transcription	Ovary	ovary
8	chr8:8923800-8927800	Weak transcription	Osteobl	bone
9	chr8:8923800-8928200	Weak transcription	Aorta	Aorta
10	chr8:8923800-8929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:8923800-8932000	Weak transcription	A549	lung
12	chr8:8924000-8932000	Weak transcription	Right Atrium	heart
13	chr8:8924000-8936200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr8:8924000-8937800	Weak transcription	Lung	lung
15	chr8:8924000-8939600	Weak transcription	Right Ventricle	heart
16	chr8:8924200-8927400	Weak transcription	HUVEC	blood vessel
17	chr8:8924200-8928000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:8924200-8928200	Weak transcription	Psoas Muscle	Psoas
19	chr8:8924200-8930400	Weak transcription	Fetal Intestine Small	intestine
20	chr8:8924400-8928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:8924400-8929000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:8924600-8927800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:8924600-8928000	Weak transcription	HSMMtube	muscle
24	chr8:8924600-8928200	Weak transcription	Left Ventricle	heart
25	chr8:8924600-8930200	Weak transcription	HSMM	muscle
26	chr8:8924600-8932200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:8924800-8930200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:8925000-8927800	Weak transcription	Fetal Muscle Leg	muscle
29	chr8:8925000-8928200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr8:8925000-8932000	Weak transcription	Fetal Lung	lung
31	chr8:8925200-8930000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:8925200-8930200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr8:8925200-8932200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr8:8925200-8932600	Weak transcription	Liver	Liver
35	chr8:8925600-8930200	Weak transcription	Fetal Heart	heart
36	chr8:8926400-8926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:8926400-8928400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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