Variant report

Variant	rs10081966
Chromosome Location	chr1:161273660-161273661
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:161273354..161275189-chr1:161279747..161282095,2	MCF-7	breast:
2	chr1:161194395..161196017-chr1:161272976..161274680,2	K562	blood:

Variant related genes	Relation type
ENSG00000158882	Chromatin interaction
ENSG00000158887	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11265585	0.84[EUR][1000 genomes]
rs4657015	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4657016	0.94[CHB][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4657017	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427588	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv525443	chr1:161263380-161274311	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv517826	chr1:161263380-161277601	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv2039526	chr1:161273660-161273661	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161250400-161274200	Weak transcription	Fetal Stomach	stomach
2	chr1:161252400-161274800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:161255200-161274800	Weak transcription	Lung	lung
4	chr1:161255600-161274600	Weak transcription	Adipose Nuclei	Adipose
5	chr1:161261400-161273800	Weak transcription	Fetal Intestine Small	intestine
6	chr1:161261600-161274200	Weak transcription	Fetal Intestine Large	intestine
7	chr1:161263200-161274600	Weak transcription	Placenta	Placenta
8	chr1:161266200-161273800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr1:161267600-161273800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr1:161268200-161273800	Weak transcription	GM12878-XiMat	blood
11	chr1:161269400-161273800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr1:161269400-161274000	Weak transcription	K562	blood
13	chr1:161269400-161274200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr1:161269400-161274200	Weak transcription	Brain Angular Gyrus	brain
15	chr1:161269400-161274400	Weak transcription	Small Intestine	intestine
16	chr1:161269800-161274800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:161269800-161274800	Weak transcription	Pancreas	Pancrea
18	chr1:161270000-161275000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:161270600-161273800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr1:161270800-161273800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:161270800-161274200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr1:161270800-161274200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr1:161270800-161274200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:161270800-161275000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:161271000-161274800	Weak transcription	HMEC	breast
26	chr1:161271200-161274800	Weak transcription	Fetal Heart	heart
27	chr1:161271400-161274800	Weak transcription	Gastric	stomach
28	chr1:161272000-161274200	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr1:161272000-161274200	Weak transcription	Thymus	Thymus
30	chr1:161272000-161274800	Enhancers	HUVEC	blood vessel
31	chr1:161272600-161273800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr1:161272600-161273800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr1:161272600-161274800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr1:161272600-161275200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr1:161272800-161274000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr1:161272800-161274200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
37	chr1:161272800-161274400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr1:161272800-161274800	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr1:161272800-161274800	Genic enhancers	Primary T cells from cord blood	blood
40	chr1:161273000-161274200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr1:161273200-161273800	Genic enhancers	Primary monocytes fromperipheralblood	blood
42	chr1:161273200-161273800	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr1:161273200-161273800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr1:161273200-161273800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr1:161273200-161274000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:161273200-161275000	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr1:161273200-161275000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:161273400-161273800	Weak transcription	Primary B cells from cord blood	blood
49	chr1:161273400-161274000	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr1:161273400-161274400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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