Variant report

Variant	rs10082667
Chromosome Location	chr11:63443035-63443036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63442659..63445643-chr11:63445917..63448695,3	MCF-7	breast:
2	chr11:63437875..63444495-chr11:63445155..63450267,13	K562	blood:
3	chr11:63440853..63444495-chr11:63447183..63450382,6	K562	blood:
4	chr11:63441225..63443391-chr11:63450750..63453707,2	K562	blood:

Variant related genes	Relation type
ENSG00000133318	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11231552	0.97[AFR][1000 genomes]
rs11231570	0.82[AFR][1000 genomes]
rs12278290	0.97[AFR][1000 genomes]
rs58198493	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv832183	chr11:63416678-63564565	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63439200-63445200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:63439200-63448400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:63439200-63448400	Weak transcription	Aorta	Aorta
4	chr11:63439600-63448200	Weak transcription	Brain Angular Gyrus	brain
5	chr11:63439600-63448200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:63439600-63448400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:63439600-63448400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:63439600-63448400	Weak transcription	Liver	Liver
9	chr11:63439600-63448400	Weak transcription	Right Ventricle	heart
10	chr11:63439800-63448000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:63439800-63448000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr11:63439800-63448200	Weak transcription	Fetal Intestine Large	intestine
13	chr11:63441000-63448200	Weak transcription	A549	lung
14	chr11:63441200-63448000	Weak transcription	K562	blood
15	chr11:63441400-63443600	Weak transcription	Fetal Heart	heart
16	chr11:63441400-63447200	Weak transcription	NHLF	lung
17	chr11:63441400-63447600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:63441400-63447800	Weak transcription	HMEC	breast
19	chr11:63441400-63448200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:63441400-63448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:63441600-63448200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:63441600-63448200	Weak transcription	NH-A	brain
23	chr11:63441800-63446600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr11:63441800-63446800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr11:63441800-63446800	Weak transcription	HSMM	muscle
26	chr11:63441800-63447200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:63442000-63447000	Weak transcription	HSMMtube	muscle
28	chr11:63442000-63447200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:63442200-63446400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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