Variant report

Variant	rs10082904
Chromosome Location	chr12:42076300-42076301
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10506199	1.00[EUR][1000 genomes]
rs10506200	1.00[EUR][1000 genomes]
rs11181067	1.00[AMR][1000 genomes]
rs12301454	1.00[AMR][1000 genomes]
rs12302175	1.00[AMR][1000 genomes]
rs12302597	1.00[AMR][1000 genomes]
rs12303932	1.00[AMR][1000 genomes]
rs12305631	1.00[AMR][1000 genomes]
rs12305909	1.00[AMR][1000 genomes]
rs17090752	1.00[EUR][1000 genomes]
rs17129486	1.00[EUR][1000 genomes]
rs17129531	1.00[EUR][1000 genomes]
rs17129534	1.00[EUR][1000 genomes]
rs17129537	1.00[EUR][1000 genomes]
rs17129541	1.00[EUR][1000 genomes]
rs55724233	1.00[EUR][1000 genomes]
rs55792075	1.00[EUR][1000 genomes]
rs55856507	1.00[EUR][1000 genomes]
rs55884504	1.00[EUR][1000 genomes]
rs55968872	1.00[EUR][1000 genomes]
rs56146127	1.00[EUR][1000 genomes]
rs56185948	1.00[EUR][1000 genomes]
rs56261613	1.00[EUR][1000 genomes]
rs57751766	1.00[EUR][1000 genomes]
rs58063208	1.00[EUR][1000 genomes]
rs58072732	1.00[EUR][1000 genomes]
rs58194527	1.00[EUR][1000 genomes]
rs58372295	1.00[EUR][1000 genomes]
rs58627781	1.00[EUR][1000 genomes]
rs59441074	1.00[EUR][1000 genomes]
rs59834004	1.00[EUR][1000 genomes]
rs60079864	1.00[EUR][1000 genomes]
rs60114889	1.00[EUR][1000 genomes]
rs60304731	1.00[EUR][1000 genomes]
rs61024587	1.00[EUR][1000 genomes]
rs61152857	1.00[EUR][1000 genomes]
rs61518477	1.00[EUR][1000 genomes]
rs7133757	1.00[EUR][1000 genomes]
rs7134836	1.00[EUR][1000 genomes]
rs7299844	1.00[EUR][1000 genomes]
rs7300013	1.00[EUR][1000 genomes]
rs7300654	1.00[EUR][1000 genomes]
rs7303110	1.00[EUR][1000 genomes]
rs7304463	1.00[EUR][1000 genomes]
rs7316657	1.00[EUR][1000 genomes]
rs73270611	1.00[EUR][1000 genomes]
rs73274214	1.00[EUR][1000 genomes]
rs73274218	1.00[EUR][1000 genomes]
rs73274236	1.00[EUR][1000 genomes]
rs73282231	1.00[EUR][1000 genomes]
rs73282241	1.00[EUR][1000 genomes]
rs73282253	1.00[EUR][1000 genomes]
rs73282257	1.00[EUR][1000 genomes]
rs73282264	1.00[EUR][1000 genomes]
rs74077803	1.00[EUR][1000 genomes]
rs74077884	1.00[EUR][1000 genomes]
rs74077888	1.00[EUR][1000 genomes]
rs74078220	1.00[EUR][1000 genomes]
rs74078221	1.00[EUR][1000 genomes]
rs74078239	1.00[EUR][1000 genomes]
rs74078240	1.00[EUR][1000 genomes]
rs74078256	1.00[EUR][1000 genomes]
rs74079833	1.00[EUR][1000 genomes]
rs74079834	1.00[EUR][1000 genomes]
rs74079835	1.00[EUR][1000 genomes]
rs74079837	1.00[EUR][1000 genomes]
rs74079839	1.00[EUR][1000 genomes]
rs74079840	1.00[EUR][1000 genomes]
rs74079841	1.00[EUR][1000 genomes]
rs74079843	1.00[EUR][1000 genomes]
rs74079844	1.00[EUR][1000 genomes]
rs74079848	1.00[EUR][1000 genomes]
rs74079849	1.00[EUR][1000 genomes]
rs74079850	1.00[EUR][1000 genomes]
rs74079851	1.00[EUR][1000 genomes]
rs74079852	1.00[EUR][1000 genomes]
rs74079853	1.00[EUR][1000 genomes]
rs74079855	1.00[EUR][1000 genomes]
rs74079857	1.00[EUR][1000 genomes]
rs74079859	1.00[EUR][1000 genomes]
rs74079861	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv832386	chr12:42017259-42189476	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv558701	chr12:42038171-42105409	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1791970	chr12:42066531-42080280	Active TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42075600-42076600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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