Variant report

Variant	rs1008305
Chromosome Location	chr14:78711286-78711287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11159344	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17755066	0.82[MKK][hapmap]
rs8009477	0.82[CEU][hapmap]
rs8010397	0.92[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1008305	NUMB	cis	parietal	SCAN
rs1008305	TSHR	cis	parietal	SCAN
rs1008305	JDP2	cis	cerebellum	SCAN
rs1008305	LY96	trans	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78699400-78714200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:78705200-78721600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:78707000-78711400	Weak transcription	Gastric	stomach
4	chr14:78707000-78714800	Weak transcription	Lung	lung
5	chr14:78707400-78714800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:78707400-78714800	Weak transcription	Fetal Brain Male	brain
7	chr14:78709200-78714800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:78710000-78714800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:78710200-78729800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:78710400-78714800	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:78710400-78715000	Weak transcription	Brain Anterior Caudate	brain
12	chr14:78710400-78715200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:78711200-78711400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr14:78711200-78713200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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