Variant report

Variant	rs10084460
Chromosome Location	chr2:37604136-37604137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37573509..37575748-chr2:37602573..37605323,2	MCF-7	breast:
2	chr2:37592607..37594449-chr2:37602351..37604768,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115828	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2300880	1.00[CHB][hapmap]
rs7605677	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
2	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:37583600-37607200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr2:37602200-37604200	Enhancers	Fetal Lung	lung
6	chr2:37602600-37607600	Enhancers	Osteobl	bone
7	chr2:37602800-37604200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:37602800-37604600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
9	chr2:37602800-37604800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
10	chr2:37602800-37605000	Enhancers	Fetal Stomach	stomach
11	chr2:37603000-37604400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr2:37603000-37604400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
13	chr2:37603000-37604400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:37603000-37604600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:37603000-37605800	Enhancers	HSMMtube	muscle
16	chr2:37603200-37604200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:37603200-37604200	Enhancers	Thymus	Thymus
18	chr2:37603200-37604400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr2:37603200-37604400	Enhancers	Aorta	Aorta
20	chr2:37603200-37604600	Bivalent Enhancer	Fetal Thymus	thymus
21	chr2:37603200-37604600	Bivalent Enhancer	Dnd41	blood
22	chr2:37603200-37606000	Enhancers	HSMM	muscle
23	chr2:37603400-37604200	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr2:37603400-37604200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr2:37603400-37604400	Flanking Active TSS	Primary B cells from cord blood	blood
26	chr2:37603400-37604400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
27	chr2:37603400-37604400	Enhancers	Colonic Mucosa	Colon
28	chr2:37603400-37604600	Active TSS	Stomach Smooth Muscle	stomach
29	chr2:37603400-37606400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr2:37603400-37606800	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:37603600-37604200	Flanking Active TSS	Brain Cingulate Gyrus	brain
32	chr2:37603600-37604200	Active TSS	Brain Hippocampus Middle	brain
33	chr2:37603600-37604400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:37603600-37604600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr2:37603600-37604600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:37603600-37604600	Enhancers	Brain Germinal Matrix	brain
37	chr2:37603600-37604600	Enhancers	NHLF	lung
38	chr2:37603600-37604800	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr2:37603600-37607400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:37603800-37604200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr2:37603800-37604200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr2:37603800-37604200	Flanking Active TSS	Duodenum Mucosa	Duodenum
43	chr2:37603800-37604200	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr2:37603800-37604400	Enhancers	Primary hematopoietic stem cells	blood
45	chr2:37603800-37604600	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr2:37603800-37604600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr2:37603800-37604600	Enhancers	Adipose Nuclei	Adipose
48	chr2:37603800-37605000	Flanking Active TSS	GM12878-XiMat	blood
49	chr2:37603800-37605800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr2:37603800-37607200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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