Variant report

Variant	rs10085873
Chromosome Location	chr7:150528152-150528153
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1044608	1.00[JPT][hapmap]
rs11980123	0.87[EUR][1000 genomes]
rs12666902	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12666945	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28539129	0.91[ASN][1000 genomes]
rs34285187	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34648170	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73165513	0.91[ASN][1000 genomes]
rs73165514	0.91[ASN][1000 genomes]
rs73165515	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
4	nsv1030109	chr7:150312916-150701010	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv967475	chr7:150323577-150610034	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150522400-150542800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:150526200-150528400	Enhancers	Liver	Liver
3	chr7:150527000-150528800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:150527400-150530200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:150527600-150528400	Enhancers	Fetal Intestine Large	intestine
6	chr7:150527600-150529000	Enhancers	Stomach Mucosa	stomach
7	chr7:150527600-150529200	Enhancers	Fetal Intestine Small	intestine
8	chr7:150528000-150528200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr7:150528000-150528200	Enhancers	Right Atrium	heart
10	chr7:150528000-150528400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:150528000-150528400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr7:150528000-150529000	Enhancers	Ovary	ovary
13	chr7:150528000-150529200	Weak transcription	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
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