The 2.0 version of rSNPBase

Variant report

Variant rs10085994
Chromosome Location chr8:110592108-110592109
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:110553800-110613000 Weak transcription NHLF lung
2 chr8:110567000-110593200 Weak transcription Muscle Satellite Cultured Cells --
3 chr8:110570400-110593600 Weak transcription Fetal Brain Male brain
4 chr8:110571600-110592800 Weak transcription Small Intestine intestine
5 chr8:110583800-110601600 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr8:110586000-110598800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr8:110586600-110592400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr8:110587000-110593200 Weak transcription NHDF-Ad bronchial
9 chr8:110587400-110592800 Weak transcription GM12878-XiMat blood
10 chr8:110587400-110593200 Genic enhancers Cortex derived primary cultured neurospheres brain
11 chr8:110587800-110605800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr8:110588000-110592800 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr8:110588000-110594800 Weak transcription Skeletal Muscle Female skeletal muscle
14 chr8:110588000-110600600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr8:110588200-110593000 Weak transcription Esophagus oesophagus
16 chr8:110588200-110598200 Weak transcription Ovary ovary
17 chr8:110588200-110601600 Weak transcription Left Ventricle heart
18 chr8:110588600-110596600 Weak transcription Colon Smooth Muscle Colon
19 chr8:110589000-110592200 Strong transcription NHEK skin
20 chr8:110589000-110592400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr8:110589200-110592200 Genic enhancers Ganglion Eminence derived primary cultured neurospheres brain
22 chr8:110589200-110593200 Weak transcription A549 lung
23 chr8:110589200-110598600 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr8:110589400-110593000 Strong transcription Fetal Intestine Small intestine
25 chr8:110589600-110592800 Strong transcription Duodenum Mucosa Duodenum
26 chr8:110589800-110595200 Weak transcription Psoas Muscle Psoas
27 chr8:110589800-110598000 Weak transcription Brain Substantia Nigra brain
28 chr8:110589800-110598200 Weak transcription Brain Cingulate Gyrus brain
29 chr8:110589800-110601600 Weak transcription Right Atrium heart
30 chr8:110590000-110592200 Strong transcription Fetal Intestine Large intestine
31 chr8:110590000-110592400 Strong transcription Brain Germinal Matrix brain
32 chr8:110590000-110593200 Weak transcription HSMMtube muscle
33 chr8:110590000-110597800 Weak transcription Pancreatic Islets Pancreatic Islet
34 chr8:110590000-110605600 Weak transcription K562 blood
35 chr8:110590200-110592200 Strong transcription Liver Liver
36 chr8:110590200-110592200 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr8:110590200-110654800 Weak transcription Lung lung
38 chr8:110590400-110592400 Strong transcription Fetal Brain Female brain
39 chr8:110590600-110592200 Genic enhancers Brain Dorsolateral Prefrontal Cortex brain
40 chr8:110590800-110597800 Weak transcription Brain Hippocampus Middle brain
41 chr8:110591000-110593000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr8:110591200-110592200 Transcr. at gene 5' and 3' Pancreas Pancrea
43 chr8:110591200-110594000 Enhancers Stomach Mucosa stomach
44 chr8:110591200-110601600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr8:110591400-110592400 Genic enhancers Rectal Mucosa Donor 31 rectum
46 chr8:110591400-110592800 Weak transcription HUVEC blood vessel
47 chr8:110591400-110593200 Weak transcription HMEC breast
48 chr8:110591600-110592200 Strong transcription Brain Anterior Caudate brain
49 chr8:110591600-110592400 Strong transcription Stomach Smooth Muscle stomach
50 chr8:110591600-110592600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015