Variant report

Variant	rs10087432
Chromosome Location	chr8:9403819-9403820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10216350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28538167	0.81[AFR][1000 genomes]
rs28672952	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4323472	1.00[AMR][1000 genomes]
rs4418342	1.00[AMR][1000 genomes]
rs4593541	1.00[AMR][1000 genomes]
rs4606065	1.00[AMR][1000 genomes]
rs4840435	1.00[AMR][1000 genomes]
rs6990558	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7846490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1030524	chr8:9183482-9412833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1033031	chr8:9310266-9418941	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9390000-9409800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:9401600-9404000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:9402000-9404600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:9402200-9404600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:9402400-9404000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:9402400-9404200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:9402800-9404400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:9403000-9404200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr8:9403200-9404400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:9403200-9404600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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