Variant report

Variant	rs10088896
Chromosome Location	chr8:62145379-62145380
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10088692	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10088723	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10088806	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10110755	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10110877	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10111158	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1486650	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1486651	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16927058	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16927069	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16927076	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58784874	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6471944	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7017480	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7828493	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7834956	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7844862	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62137200-62146200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:62145200-62145400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links