Variant report

Variant	rs10089245
Chromosome Location	chr8:104228230-104228231
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104220760..104222737-chr8:104228002..104230540,2	MCF-7	breast:
2	chr8:104226501..104229648-chr8:104233395..104236650,3	MCF-7	breast:
3	chr8:104174608..104177448-chr8:104227251..104229370,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10097018	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10103573	0.97[ASN][1000 genomes]
rs10107615	0.88[ASN][1000 genomes]
rs10955313	0.92[ASN][1000 genomes]
rs11782632	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17799574	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2201370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34111666	0.92[ASN][1000 genomes]
rs34602800	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35710705	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736045	0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs57766637	0.82[ASN][1000 genomes]
rs60751214	0.82[ASN][1000 genomes]
rs6985929	0.84[ASN][1000 genomes]
rs7002454	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7005789	0.84[ASN][1000 genomes]
rs73283939	0.84[ASN][1000 genomes]
rs73283943	0.84[ASN][1000 genomes]
rs73283949	0.82[ASN][1000 genomes]
rs7817074	1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7818987	0.84[ASN][1000 genomes]
rs7822939	0.84[ASN][1000 genomes]
rs7835655	0.84[ASN][1000 genomes]
rs7844873	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv14660	chr8:104182119-104245529	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1015965	chr8:104192086-104361108	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10089245	KLF10	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104220400-104229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:104222400-104240800	Weak transcription	Gastric	stomach
3	chr8:104222400-104241200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:104222800-104240800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:104222800-104241000	Weak transcription	NHDF-Ad	bronchial
6	chr8:104223600-104231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:104225400-104240400	Weak transcription	Brain Angular Gyrus	brain
8	chr8:104225600-104233000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:104225800-104229800	Weak transcription	Fetal Stomach	stomach
10	chr8:104226400-104242800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:104226600-104234800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104226800-104232400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:104227000-104230800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:104227400-104229000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr8:104227400-104229200	Weak transcription	Brain Anterior Caudate	brain
16	chr8:104227400-104237800	Weak transcription	Aorta	Aorta
17	chr8:104227600-104242200	Weak transcription	Fetal Brain Female	brain
18	chr8:104227600-104245400	Weak transcription	Fetal Brain Male	brain
19	chr8:104227800-104229200	Weak transcription	Brain Substantia Nigra	brain
20	chr8:104228000-104228400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:104228000-104228400	Genic enhancers	Brain Cingulate Gyrus	brain
22	chr8:104228000-104232000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:104228000-104241600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:104228200-104228400	Genic enhancers	Brain Hippocampus Middle	brain
25	chr8:104228200-104228800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:104228200-104229200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:104228200-104229400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr8:104228200-104229600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:104228200-104233800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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