Variant report

Variant	rs10089316
Chromosome Location	chr8:11354248-11354249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11350709..11353692-chr8:11353928..11355539,2	K562	blood:

Variant related genes	Relation type
ENSG00000136573	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10109708	1.00[EUR][1000 genomes]
rs10113720	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs13439390	1.00[CEU][hapmap]
rs17329884	1.00[CEU][hapmap]
rs2618465	1.00[CEU][hapmap]
rs2618474	1.00[EUR][1000 genomes]
rs28443174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28619169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28624219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626552	1.00[AMR][1000 genomes]
rs28658025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7017352	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11349600-11354400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:11350200-11356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:11350400-11354400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr8:11350400-11355400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:11351000-11354800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:11352200-11354800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:11352200-11360400	Weak transcription	Spleen	Spleen
8	chr8:11352400-11354800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:11352600-11354800	Enhancers	Osteobl	bone
10	chr8:11352600-11356200	Flanking Active TSS	Dnd41	blood
11	chr8:11352800-11354600	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
12	chr8:11352800-11357600	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr8:11353000-11354400	Weak transcription	Primary T cells from cord blood	blood
14	chr8:11353000-11354400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:11353200-11361000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:11353400-11354400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr8:11353400-11354800	Enhancers	NH-A	brain
18	chr8:11353400-11357200	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
19	chr8:11353400-11367200	Enhancers	Fetal Thymus	thymus
20	chr8:11353600-11354400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:11353800-11354400	Enhancers	NHDF-Ad	bronchial
22	chr8:11353800-11355000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:11353800-11355600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:11353800-11355600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:11353800-11355600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:11353800-11357800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:11354000-11354400	Enhancers	NHLF	lung
28	chr8:11354000-11354600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr8:11354000-11354800	Enhancers	HSMMtube	muscle
30	chr8:11354000-11355200	Enhancers	HMEC	breast
31	chr8:11354000-11357200	Enhancers	Primary T cells fromperipheralblood	blood
32	chr8:11354000-11357200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr8:11354000-11357200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr8:11354000-11357600	Enhancers	Thymus	Thymus
35	chr8:11354200-11354800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr8:11354200-11355000	Enhancers	HSMM	muscle
37	chr8:11354200-11356000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
38	chr8:11354200-11356000	Enhancers	NHEK	skin
39	chr8:11354200-11357200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:11354200-11357400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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