Variant report

Variant	rs10089880
Chromosome Location	chr8:127842405-127842406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:127834592..127842945-chr8:128745185..128752445,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction
ENSG00000249375	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10102846	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10103070	0.82[EUR][1000 genomes]
rs10956329	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs13257258	0.81[EUR][1000 genomes]
rs1873186	0.83[CEU][hapmap]
rs2046790	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2046791	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6983599	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891438	chr8:127670339-127845702	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv1819408	chr8:127835876-127898165	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:127837400-127842800	Enhancers	NHLF	lung
2	chr8:127837400-127843800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:127837800-127845600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:127837800-127845800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:127837800-127845800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:127838000-127845400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:127838000-127845400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:127838200-127845400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:127839200-127843400	Enhancers	HUVEC	blood vessel
10	chr8:127840200-127842600	Enhancers	NHDF-Ad	bronchial
11	chr8:127840400-127845800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:127840600-127845800	Weak transcription	Fetal Kidney	kidney
13	chr8:127840800-127845400	Weak transcription	Fetal Lung	lung
14	chr8:127840800-127845600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:127840800-127845600	Weak transcription	Left Ventricle	heart
16	chr8:127840800-127845800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:127840800-127845800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:127840800-127845800	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr8:127840800-127845800	Enhancers	HSMM	muscle
20	chr8:127841000-127842600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:127841000-127843000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:127841000-127843000	Weak transcription	HMEC	breast
23	chr8:127841000-127845000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:127841000-127845400	Weak transcription	Placenta	Placenta
25	chr8:127841000-127845400	Weak transcription	Fetal Stomach	stomach
26	chr8:127841000-127845400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr8:127841000-127845600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr8:127841000-127845600	Weak transcription	Fetal Thymus	thymus
29	chr8:127841000-127845800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr8:127841000-127845800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr8:127841200-127842600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:127841200-127845000	Weak transcription	NH-A	brain
33	chr8:127841200-127845200	Weak transcription	Fetal Heart	heart
34	chr8:127841400-127843200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:127841400-127843800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:127841400-127844400	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:127841400-127845000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:127841800-127844800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr8:127842000-127842600	Weak transcription	NHEK	skin
40	chr8:127842000-127845000	Weak transcription	HSMMtube	muscle
41	chr8:127842000-127845400	Weak transcription	Osteobl	bone
42	chr8:127842200-127843000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:127842200-127843200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:127842400-127847000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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