Variant report

Variant	rs1009194
Chromosome Location	chr15:75475438-75475439
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75473527..75476578-chr15:75479286..75482209,3	K562	blood:
2	chr15:75463364..75465146-chr15:75473364..75475576,2	K562	blood:
3	chr15:75473895..75476672-chr15:75480654..75483531,2	MCF-7	breast:
4	chr15:75319716..75322406-chr15:75473522..75476448,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000240366	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11634836	0.80[CEU][hapmap]
rs11636245	0.85[CEU][hapmap]
rs1873379	0.80[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
5	nsv1037713	chr15:75401213-75665304	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
6	nsv1053212	chr15:75428467-75534408	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv833056	chr15:75452947-75614590	Enhancers Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75466400-75475600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:75469800-75475600	Enhancers	Fetal Heart	heart
3	chr15:75470200-75475800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:75471400-75475600	Enhancers	Fetal Intestine Large	intestine
5	chr15:75471400-75475600	Enhancers	Fetal Intestine Small	intestine
6	chr15:75471600-75475600	Enhancers	Primary hematopoietic stem cells	blood
7	chr15:75471800-75475600	Enhancers	Fetal Thymus	thymus
8	chr15:75471800-75475600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr15:75471800-75476800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:75472000-75475600	Enhancers	Fetal Muscle Leg	muscle
11	chr15:75472800-75475600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:75473000-75477800	Weak transcription	Right Ventricle	heart
13	chr15:75473000-75478800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:75473000-75487600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:75473200-75475600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:75473200-75476800	Weak transcription	Spleen	Spleen
17	chr15:75473200-75477800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr15:75473200-75483200	Weak transcription	Aorta	Aorta
19	chr15:75473200-75483400	Weak transcription	Left Ventricle	heart
20	chr15:75474000-75475600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:75474000-75475600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:75474000-75475600	Enhancers	Fetal Stomach	stomach
23	chr15:75474200-75475600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:75474200-75475600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr15:75474200-75475600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:75474200-75475600	Enhancers	Brain Substantia Nigra	brain
27	chr15:75474200-75475600	Enhancers	Colonic Mucosa	Colon
28	chr15:75474200-75475600	Enhancers	Pancreas	Pancrea
29	chr15:75474200-75475600	Flanking Active TSS	HepG2	liver
30	chr15:75474200-75475600	Enhancers	HMEC	breast
31	chr15:75474200-75475600	Enhancers	NH-A	brain
32	chr15:75474400-75475600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:75474600-75475600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr15:75474600-75475600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:75475000-75475600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:75475000-75475600	Enhancers	Placenta	Placenta
37	chr15:75475200-75475600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
38	chr15:75475200-75476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:75475200-75476600	Weak transcription	GM12878-XiMat	blood
40	chr15:75475200-75478000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:75475200-75478400	Weak transcription	Thymus	Thymus
42	chr15:75475400-75475600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:75475400-75476600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr15:75475400-75476600	Weak transcription	Lung	lung
45	chr15:75475400-75477600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:75475400-75477800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr15:75475400-75477800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr15:75475400-75487800	Weak transcription	Right Atrium	heart

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