Variant report

Variant	rs10092120
Chromosome Location	chr8:67413269-67413270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10095700	0.81[ASN][1000 genomes]
rs10100008	0.86[EUR][1000 genomes]
rs11782087	0.86[EUR][1000 genomes]
rs11984980	0.86[EUR][1000 genomes]
rs12541034	0.85[ASN][1000 genomes]
rs12545483	0.91[ASN][1000 genomes]
rs16932940	0.85[ASN][1000 genomes]
rs16932942	0.85[ASN][1000 genomes]
rs2004791	0.85[ASN][1000 genomes]
rs60798600	0.85[EUR][1000 genomes]
rs6995972	0.81[ASN][1000 genomes]
rs736458	0.84[ASN][1000 genomes]
rs746789	0.85[ASN][1000 genomes]
rs9657084	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67406800-67419400	Weak transcription	Liver	Liver
2	chr8:67407000-67417400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:67407200-67419400	Weak transcription	Aorta	Aorta
4	chr8:67407400-67416200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:67407600-67415400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr8:67408200-67415400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:67409800-67413600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:67411200-67415400	Weak transcription	Brain Angular Gyrus	brain
9	chr8:67411200-67418800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:67411200-67419200	Weak transcription	HSMM	muscle
11	chr8:67411200-67419200	Weak transcription	NH-A	brain
12	chr8:67411200-67419400	Weak transcription	A549	lung
13	chr8:67411400-67414000	Weak transcription	Brain Anterior Caudate	brain
14	chr8:67411400-67416000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:67411400-67416000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:67411600-67413800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:67411600-67415200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:67411800-67414400	Weak transcription	Brain Substantia Nigra	brain
19	chr8:67411800-67415600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:67412800-67416000	Enhancers	Brain Hippocampus Middle	brain
21	chr8:67413000-67419200	Weak transcription	Brain Germinal Matrix	brain

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