Variant report

Variant	rs10092803
Chromosome Location	chr8:9010204-9010205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr8:9009897-9010208	SH-SY5Y	brain:	n/a	chr8:9010081-9010097 chr8:9010083-9010095 chr8:9010106-9010113 chr8:9010083-9010090 chr8:9010075-9010092
2	CEBPB	chr8:9010095-9010417	IMR90	lung:	n/a	chr8:9010284-9010295 chr8:9010286-9010297
3	RUNX3	chr8:9010123-9010771	GM12878	blood:	n/a	n/a
4	CEBPB	chr8:9010193-9010443	HepG2	liver:	n/a	chr8:9010284-9010295 chr8:9010286-9010297
5	GATA2	chr8:9009911-9010301	SH-SY5Y	brain:	n/a	chr8:9010081-9010097 chr8:9010083-9010095 chr8:9010106-9010113 chr8:9010083-9010090 chr8:9010075-9010092
6	EP300	chr8:9009933-9010277	K562	blood:	n/a	n/a
7	RUNX3	chr8:9010160-9010664	GM12878	blood:	n/a	n/a
8	CEBPB	chr8:9010194-9010297	H1-hESC	embryonic stem cell:	n/a	chr8:9010284-9010295 chr8:9010286-9010297
9	RCOR1	chr8:9009972-9010301	K562	blood:	n/a	n/a
10	CEBPB	chr8:9010036-9010737	K562	blood:	n/a	chr8:9010284-9010295 chr8:9010286-9010297
11	GATA1	chr8:9007842-9010696	PBDE	blood:	n/a	chr8:9010081-9010097 chr8:9010083-9010095 chr8:9010106-9010113 chr8:9010083-9010090 chr8:9010075-9010092
12	CEBPB	chr8:9010126-9010638	Hela-S3	cervix:	n/a	chr8:9010284-9010295 chr8:9010286-9010297

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41464725..41467808-chr8:9007471..9010491,5	K562	blood:

Variant related genes	Relation type
PPP1R3B	TF binding region
ENSG00000188825	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10102554	0.88[AFR][1000 genomes]
rs10113601	0.81[AFR][1000 genomes]
rs11249904	0.81[AFR][1000 genomes]
rs11993336	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv1022328	chr8:8954003-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv610206	chr8:8961017-9162048	Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv1026279	chr8:8982622-9030279	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	n/a
8	nsv949434	chr8:8993551-9318404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
9	nsv1016574	chr8:9007186-9061281	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	nsv539461	chr8:9007186-9061281	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9006400-9010800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:9008200-9012200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:9008800-9012200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:9009000-9010400	Active TSS	Fetal Intestine Large	intestine
5	chr8:9009000-9010800	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr8:9009000-9016200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:9009000-9016800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:9009400-9010400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:9009400-9010400	Weak transcription	Colonic Mucosa	Colon
10	chr8:9009400-9010400	Enhancers	Fetal Lung	lung
11	chr8:9009400-9010400	Active TSS	Fetal Muscle Trunk	muscle
12	chr8:9009400-9010400	Weak transcription	Small Intestine	intestine
13	chr8:9009400-9010800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:9009400-9017000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr8:9009400-9039000	Weak transcription	Pancreas	Pancrea
16	chr8:9009600-9010400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:9009600-9010400	Weak transcription	Left Ventricle	heart
18	chr8:9009600-9010400	Weak transcription	Stomach Mucosa	stomach
19	chr8:9009600-9010600	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:9009600-9010600	Enhancers	Primary B cells from peripheral blood	blood
21	chr8:9009600-9010600	Enhancers	Primary T cells fromperipheralblood	blood
22	chr8:9009600-9010600	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr8:9009600-9010600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:9009600-9010600	Enhancers	HMEC	breast
25	chr8:9009600-9010800	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr8:9009600-9010800	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr8:9009600-9010800	Enhancers	K562	blood
28	chr8:9009800-9010400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:9009800-9010400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr8:9009800-9010400	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr8:9009800-9010600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:9009800-9010600	Enhancers	Primary hematopoietic stem cells	blood
33	chr8:9009800-9010600	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr8:9009800-9010600	Enhancers	Duodenum Mucosa	Duodenum
35	chr8:9009800-9010600	Flanking Active TSS	Fetal Heart	heart
36	chr8:9009800-9010600	Enhancers	Right Atrium	heart
37	chr8:9009800-9010800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
38	chr8:9009800-9010800	Enhancers	Primary T cells from cord blood	blood
39	chr8:9009800-9010800	Enhancers	Psoas Muscle	Psoas
40	chr8:9010000-9010600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr8:9010000-9010600	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr8:9010000-9010800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:9010000-9010800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:9010000-9010800	Flanking Active TSS	Liver	Liver
45	chr8:9010200-9010400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr8:9010200-9010400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:9010200-9010400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:9010200-9010400	Enhancers	Fetal Kidney	kidney
49	chr8:9010200-9010600	Enhancers	H9 Cell Line	embryonic stem cell
50	chr8:9010200-9010600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links