Variant report

Variant	rs10093125
Chromosome Location	chr8:10925464-10925465
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10911187..10913100-chr8:10924744..10926931,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2409688	0.93[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs28654478	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10917000-10926000	Weak transcription	Gastric	stomach
2	chr8:10922000-10929600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:10922800-10926200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:10922800-10926200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:10923600-10925600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:10923600-10925600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr8:10923600-10926000	Enhancers	Brain Angular Gyrus	brain
8	chr8:10923800-10927800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10924200-10925600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:10924200-10925600	Enhancers	HMEC	breast
11	chr8:10924200-10925800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:10924200-10925800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:10924200-10926400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:10924400-10925600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr8:10924600-10926000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:10924600-10926400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:10924600-10929400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:10924800-10925600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:10924800-10931400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:10925000-10925600	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr8:10925000-10925600	Enhancers	HSMM	muscle
22	chr8:10925000-10926400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr8:10925000-10926400	Enhancers	Brain Anterior Caudate	brain
24	chr8:10925000-10929200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:10925000-10930800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:10925000-10931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:10925000-10931200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr8:10925000-10941800	Weak transcription	Right Atrium	heart
29	chr8:10925200-10929400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr8:10925400-10925600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:10925400-10925600	Enhancers	Spleen	Spleen
32	chr8:10925400-10925800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr8:10925400-10926800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr8:10925400-10929400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:10925400-10929400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr8:10925400-10931200	Weak transcription	HSMMtube	muscle

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