Variant report

Variant	rs10093542
Chromosome Location	chr8:95486881-95486882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95485646..95487396-chr8:95731182..95733187,2	MCF-7	breast:
2	chr8:95484510..95486991-chr8:95494041..95495783,2	MCF-7	breast:
3	chr8:95476965..95478534-chr8:95484970..95486977,2	K562	blood:
4	chr8:95485981..95488677-chr8:95730553..95733529,2	K562	blood:

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10086307	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10086311	0.96[EUR][1000 genomes]
rs10087221	0.96[EUR][1000 genomes]
rs10089982	0.96[EUR][1000 genomes]
rs10090029	0.96[EUR][1000 genomes]
rs10090628	1.00[EUR][1000 genomes]
rs10094155	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10094298	0.96[EUR][1000 genomes]
rs10094477	0.96[EUR][1000 genomes]
rs10095474	0.96[EUR][1000 genomes]
rs10095883	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10097107	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10098298	1.00[EUR][1000 genomes]
rs10098682	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10102139	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10103436	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10104301	0.96[EUR][1000 genomes]
rs10104637	1.00[CEU][hapmap]
rs10104756	1.00[CEU][hapmap]
rs10104797	1.00[EUR][1000 genomes]
rs10105476	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10106455	1.00[EUR][1000 genomes]
rs10110389	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10111251	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10217108	0.92[EUR][1000 genomes]
rs10441536	0.96[EUR][1000 genomes]
rs10441537	0.92[EUR][1000 genomes]
rs1055798	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12334369	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12334578	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334675	1.00[CEU][hapmap]
rs12334783	0.96[EUR][1000 genomes]
rs12334844	0.96[EUR][1000 genomes]
rs12334990	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12335104	0.96[EUR][1000 genomes]
rs13438933	0.96[EUR][1000 genomes]
rs13438940	0.96[EUR][1000 genomes]
rs13439154	1.00[EUR][1000 genomes]
rs13439558	0.96[EUR][1000 genomes]
rs13439676	0.96[EUR][1000 genomes]
rs2119461	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2381883	0.96[EUR][1000 genomes]
rs28386976	1.00[EUR][1000 genomes]
rs28397924	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28406352	0.96[EUR][1000 genomes]
rs28409018	0.96[EUR][1000 genomes]
rs28420254	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28436849	0.96[EUR][1000 genomes]
rs28449797	0.92[EUR][1000 genomes]
rs28475734	0.96[EUR][1000 genomes]
rs28480604	0.96[EUR][1000 genomes]
rs28481457	0.96[EUR][1000 genomes]
rs28498495	0.96[EUR][1000 genomes]
rs28502182	0.96[EUR][1000 genomes]
rs28524089	0.96[EUR][1000 genomes]
rs28526027	0.96[EUR][1000 genomes]
rs28539788	0.92[EUR][1000 genomes]
rs28542193	1.00[EUR][1000 genomes]
rs28563951	0.96[EUR][1000 genomes]
rs28564036	0.96[EUR][1000 genomes]
rs28572173	1.00[EUR][1000 genomes]
rs28605692	1.00[CEU][hapmap]
rs28608052	1.00[EUR][1000 genomes]
rs28634264	0.96[EUR][1000 genomes]
rs28666401	0.96[EUR][1000 genomes]
rs28681034	1.00[EUR][1000 genomes]
rs28775004	0.96[EUR][1000 genomes]
rs28805925	0.96[EUR][1000 genomes]
rs28829590	0.96[EUR][1000 genomes]
rs28848914	0.92[EUR][1000 genomes]
rs3136421	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4567002	0.96[EUR][1000 genomes]
rs56859277	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57897120	1.00[EUR][1000 genomes]
rs6992902	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6998829	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73695616	1.00[EUR][1000 genomes]
rs73695617	1.00[EUR][1000 genomes]
rs73695619	1.00[EUR][1000 genomes]
rs73695620	1.00[EUR][1000 genomes]
rs73695622	1.00[EUR][1000 genomes]
rs73695624	1.00[EUR][1000 genomes]
rs73698013	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8117	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9297938	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv1835971	chr8:95467241-95490541	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95483000-95487800	Active TSS	GM12878-XiMat	blood
2	chr8:95485200-95487800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr8:95485600-95487000	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr8:95485800-95487200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr8:95485800-95487600	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr8:95485800-95488000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:95485800-95488000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:95486000-95487800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:95486000-95488000	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr8:95486000-95488000	Active TSS	H9 Cell Line	embryonic stem cell
11	chr8:95486000-95488000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:95486000-95488000	Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr8:95486000-95488000	Active TSS	HUES64 Cell Line	embryonic stem cell
14	chr8:95486000-95488000	Active TSS	Fetal Intestine Small	intestine
15	chr8:95486000-95488000	Active TSS	HSMM	muscle
16	chr8:95486200-95487000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:95486200-95487000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:95486200-95487000	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr8:95486200-95487000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr8:95486200-95487400	Active TSS	K562	blood
21	chr8:95486200-95487800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:95486200-95487800	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr8:95486200-95487800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:95486200-95487800	Active TSS	Fetal Stomach	stomach
25	chr8:95486200-95487800	Active TSS	A549	lung
26	chr8:95486200-95487800	Active TSS	HepG2	liver
27	chr8:95486200-95488000	Active TSS	H1 Cell Line	embryonic stem cell
28	chr8:95486200-95488000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:95486200-95488000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:95486200-95488000	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr8:95486200-95488000	Active TSS	Colonic Mucosa	Colon
32	chr8:95486200-95488000	Active TSS	Fetal Muscle Trunk	muscle
33	chr8:95486200-95488000	Active TSS	NHLF	lung
34	chr8:95486400-95487000	Flanking Active TSS	Fetal Brain Male	brain
35	chr8:95486400-95487000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr8:95486400-95487000	Weak transcription	Stomach Mucosa	stomach
37	chr8:95486400-95487800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:95486400-95487800	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr8:95486400-95487800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr8:95486400-95487800	Active TSS	Fetal Brain Female	brain
41	chr8:95486400-95487800	Active TSS	Fetal Intestine Large	intestine
42	chr8:95486400-95488000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:95486400-95488000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:95486400-95488000	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr8:95486400-95488000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:95486400-95488000	Active TSS	iPS-20b Cell Line	embryonic stem cell
47	chr8:95486400-95488000	Flanking Active TSS	Primary B cells from cord blood	blood
48	chr8:95486400-95488000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr8:95486600-95487000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
50	chr8:95486600-95487000	Flanking Active TSS	Primary B cells from peripheral blood	blood

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