Variant report

Variant	rs10093890
Chromosome Location	chr8:112627652-112627653
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10086607	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10087264	1.00[EUR][1000 genomes]
rs10087560	1.00[EUR][1000 genomes]
rs10096432	1.00[EUR][1000 genomes]
rs10097331	1.00[EUR][1000 genomes]
rs10097434	1.00[EUR][1000 genomes]
rs10102136	1.00[EUR][1000 genomes]
rs10105222	1.00[EUR][1000 genomes]
rs10111953	1.00[EUR][1000 genomes]
rs10112264	1.00[EUR][1000 genomes]
rs10217055	1.00[EUR][1000 genomes]
rs11985091	1.00[EUR][1000 genomes]
rs11988375	1.00[EUR][1000 genomes]
rs11990106	1.00[EUR][1000 genomes]
rs11995417	1.00[EUR][1000 genomes]
rs11995425	1.00[EUR][1000 genomes]
rs11997164	1.00[EUR][1000 genomes]
rs16882142	1.00[EUR][1000 genomes]
rs16882144	1.00[EUR][1000 genomes]
rs16882151	1.00[EUR][1000 genomes]
rs16882157	1.00[EUR][1000 genomes]
rs2067009	1.00[EUR][1000 genomes]
rs28431296	1.00[EUR][1000 genomes]
rs28451549	1.00[EUR][1000 genomes]
rs28464514	1.00[EUR][1000 genomes]
rs28473496	1.00[EUR][1000 genomes]
rs28492788	1.00[EUR][1000 genomes]
rs28498297	1.00[EUR][1000 genomes]
rs28579296	1.00[EUR][1000 genomes]
rs28641608	1.00[EUR][1000 genomes]
rs28681647	1.00[EUR][1000 genomes]
rs28682951	1.00[EUR][1000 genomes]
rs28712168	1.00[EUR][1000 genomes]
rs28713372	1.00[EUR][1000 genomes]
rs28775383	1.00[EUR][1000 genomes]
rs35704298	1.00[EUR][1000 genomes]
rs6992650	1.00[EUR][1000 genomes]
rs6993002	1.00[EUR][1000 genomes]
rs7006161	1.00[EUR][1000 genomes]
rs7010351	1.00[EUR][1000 genomes]
rs7010371	1.00[EUR][1000 genomes]
rs73326030	1.00[EUR][1000 genomes]
rs73326091	1.00[EUR][1000 genomes]
rs73327914	1.00[EUR][1000 genomes]
rs73327934	1.00[EUR][1000 genomes]
rs73327954	1.00[EUR][1000 genomes]
rs7828275	1.00[EUR][1000 genomes]
rs7832909	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465763	chr8:112325064-112712038	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv611902	chr8:112325064-112712038	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1027249	chr8:112327722-112711706	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv539721	chr8:112327722-112711706	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1026097	chr8:112382141-112714042	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1017231	chr8:112393019-112711706	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv916709	chr8:112439641-112697491	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv891314	chr8:112463865-112649830	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv891316	chr8:112528407-112649830	Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv831424	chr8:112544488-112706756	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv891317	chr8:112550599-112649830	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv891319	chr8:112556687-112649830	Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
15	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
16	nsv521821	chr8:112576678-112712038	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv521997	chr8:112576678-112735588	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1017409	chr8:112588983-112711706	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
19	nsv539723	chr8:112588983-112711706	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112624200-112633800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:112627200-112628000	Enhancers	Brain Germinal Matrix	brain
3	chr8:112627600-112628200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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