Variant report

Variant	rs10093916
Chromosome Location	chr8:49532582-49532583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr8:49532580-49532730	K562	blood:	n/a	n/a
2	GATA3	chr8:49532289-49533155	MCF-7	breast:	n/a	n/a
3	RAD21	chr8:49532509-49533391	MCF-7	breast:	n/a	n/a
4	REST	chr8:49532455-49532850	PFSK-1	brain:	n/a	chr8:49532555-49532575 chr8:49532486-49532506
5	GATA3	chr8:49532288-49533304	MCF-7	breast:	n/a	n/a
6	RCOR1	chr8:49532538-49532781	K562	blood:	n/a	n/a
7	NR2F2	chr8:49532399-49533072	MCF-7	breast:	n/a	n/a
8	ZNF217	chr8:49532574-49533143	MCF-7	breast:	n/a	n/a
9	CTCF	chr8:49532560-49532710	HRE	kidney:	n/a	n/a
10	GATA3	chr8:49532475-49532938	T-47D	breast:	n/a	n/a
11	NR2F2	chr8:49532354-49533266	MCF-7	breast:	n/a	n/a
12	GATA3	chr8:49532510-49533136	MCF-7	breast:	n/a	n/a
13	MAX	chr8:49532377-49533320	MCF-7	breast:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf22-4	chr8:49532379-49533089	XLOC_006790

Variant related genes	Relation type
ENSG00000253455	TF binding region

rs_ID	r²[population]
rs28635538	1.00[AFR][1000 genomes]
rs28661079	1.00[AFR][1000 genomes]

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49529200-49532600	Weak transcription	Right Ventricle	heart
4	chr8:49530200-49534000	Weak transcription	Colon Smooth Muscle	Colon
5	chr8:49530200-49534200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:49531800-49532600	Enhancers	Left Ventricle	heart
7	chr8:49531800-49534600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49531800-49534600	Enhancers	NH-A	brain
9	chr8:49531800-49534800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:49532000-49532600	Enhancers	Right Atrium	heart
11	chr8:49532000-49532600	Flanking Active TSS	NHDF-Ad	bronchial
12	chr8:49532000-49532600	Flanking Active TSS	Osteobl	bone
13	chr8:49532000-49533600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
14	chr8:49532000-49533800	Bivalent Enhancer	Fetal Stomach	stomach
15	chr8:49532000-49534400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
16	chr8:49532000-49534600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:49532000-49534600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:49532000-49534800	Enhancers	Placenta	Placenta
19	chr8:49532200-49532600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr8:49532200-49532600	Flanking Active TSS	HSMM	muscle
21	chr8:49532200-49532600	Flanking Active TSS	HSMMtube	muscle
22	chr8:49532200-49533600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:49532200-49533600	Flanking Active TSS	NHLF	lung
24	chr8:49532200-49533800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:49532200-49533800	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr8:49532200-49533800	Enhancers	Placenta Amnion	Placenta Amnion
27	chr8:49532200-49534000	Enhancers	Fetal Kidney	kidney
28	chr8:49532200-49534600	Enhancers	HMEC	breast
29	chr8:49532400-49532800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr8:49532400-49533000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:49532400-49533200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:49532400-49533200	Flanking Active TSS	Ovary	ovary
33	chr8:49532400-49533400	Enhancers	Fetal Brain Male	brain
34	chr8:49532400-49533600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
35	chr8:49532400-49533800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr8:49532400-49533800	Flanking Active TSS	Fetal Muscle Trunk	muscle
37	chr8:49532400-49533800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr8:49532400-49534200	Bivalent Enhancer	Fetal Heart	heart
39	chr8:49532400-49534400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:49532400-49534600	Enhancers	Brain Germinal Matrix	brain
41	chr8:49532400-49534600	Enhancers	Fetal Lung	lung
42	chr8:49532400-49534600	Enhancers	A549	lung

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