Variant report

Variant	rs1009505
Chromosome Location	chr8:59134033-59134034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:59132736..59134762-chr8:59135375..59137052,2	MCF-7	breast:
2	chr8:59129638..59131864-chr8:59132963..59136157,3	MCF-7	breast:
3	chr8:59032115..59032698-chr8:59133894..59134462,2	MCF-7	breast:
4	chr8:59133453..59136419-chr8:59140412..59142414,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10957038	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12549409	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16923211	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4285477	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4737490	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723312	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs992900	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024575	chr8:59101248-59141010	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59132800-59134200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:59132800-59135200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:59133000-59134200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:59133000-59134200	Enhancers	NHDF-Ad	bronchial
5	chr8:59133000-59134200	Enhancers	NHEK	skin
6	chr8:59133000-59134400	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:59133000-59134400	Enhancers	Brain Hippocampus Middle	brain
8	chr8:59133000-59134400	Enhancers	HSMM	muscle
9	chr8:59133000-59134600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:59133000-59134600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:59133000-59134600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:59133000-59135000	Enhancers	Brain Cingulate Gyrus	brain
13	chr8:59133200-59134200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:59133200-59134200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr8:59133200-59134200	Enhancers	Fetal Lung	lung
16	chr8:59133200-59134400	Enhancers	Brain Angular Gyrus	brain
17	chr8:59133200-59134400	Enhancers	Brain Substantia Nigra	brain
18	chr8:59133200-59134400	Enhancers	HSMMtube	muscle
19	chr8:59133400-59134400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr8:59133600-59134200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr8:59133600-59134400	Enhancers	GM12878-XiMat	blood
22	chr8:59133600-59135600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:59133600-59137400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:59133800-59134200	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr8:59133800-59134200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr8:59133800-59134200	Enhancers	Fetal Brain Female	brain
27	chr8:59133800-59134400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr8:59133800-59134400	Enhancers	Brain Anterior Caudate	brain
29	chr8:59134000-59134400	Bivalent Enhancer	HMEC	breast
30	chr8:59134000-59134400	Bivalent Enhancer	NH-A	brain

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