Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10086014	0.86[ASN][1000 genomes]
rs10086939	0.88[ASN][1000 genomes]
rs10092175	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1471559	0.86[ASN][1000 genomes]
rs1471561	0.87[ASN][1000 genomes]
rs2929077	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929078	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929080	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929081	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929082	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2929083	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929084	0.88[EUR][1000 genomes]
rs2929085	0.88[EUR][1000 genomes]
rs2929086	0.84[EUR][1000 genomes]
rs2955924	0.88[EUR][1000 genomes]
rs2955925	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2955926	0.89[ASN][1000 genomes]
rs2955927	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2981177	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2981178	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2981179	0.82[EUR][1000 genomes]
rs9772008	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39951000-39968000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr8:39958000-39970800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:39959600-39976400	Weak transcription	Pancreas	Pancrea
4	chr8:39961800-39970400	Weak transcription	Placenta	Placenta
5	chr8:39962800-39968800	Weak transcription	Esophagus	oesophagus
6	chr8:39966600-39967600	Enhancers	HUVEC	blood vessel
7	chr8:39966600-39968600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:39966600-39968800	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:39966600-39969000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:39966600-39969000	Weak transcription	A549	lung
11	chr8:39967200-39971800	Weak transcription	Ovary	ovary
12	chr8:39967400-39976400	Weak transcription	Stomach Mucosa	stomach

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