Variant report

Variant	rs10095565
Chromosome Location	chr8:11373182-11373183
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:11366501..11369054-chr8:11369431..11373497,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10091586	1.00[YRI][hapmap]
rs2061832	0.83[AFR][1000 genomes]
rs2618452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2618453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2618454	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2736361	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11357400-11380000	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr8:11365400-11373400	Enhancers	NHEK	skin
3	chr8:11365800-11374600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:11366600-11375200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:11367000-11373400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:11368800-11374600	Enhancers	HSMM	muscle
7	chr8:11368800-11375800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:11369400-11373200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:11370000-11373200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:11370200-11375000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:11370600-11373600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:11370600-11375400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:11370800-11374600	Genic enhancers	Primary B cells from cord blood	blood
14	chr8:11371000-11373800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr8:11372000-11376000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr8:11372200-11386000	Weak transcription	Spleen	Spleen
17	chr8:11372400-11373600	Weak transcription	GM12878-XiMat	blood
18	chr8:11372400-11374800	Enhancers	HMEC	breast
19	chr8:11372600-11373400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:11372600-11373400	Enhancers	NHDF-Ad	bronchial
21	chr8:11372600-11373600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:11372600-11373600	Enhancers	Fetal Thymus	thymus
23	chr8:11372600-11373600	Enhancers	HSMMtube	muscle
24	chr8:11372600-11373600	Enhancers	HUVEC	blood vessel
25	chr8:11372600-11373600	Enhancers	NH-A	brain
26	chr8:11372600-11374400	Enhancers	NHLF	lung
27	chr8:11372600-11375000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr8:11372800-11373400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr8:11372800-11374400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:11372800-11374400	Enhancers	Osteobl	bone
31	chr8:11373000-11374400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:11373000-11376600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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