Variant report

Variant	rs1009558
Chromosome Location	chr3:140322115-140322116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140314929..140317518-chr3:140320988..140323953,2	K562	blood:
2	chr3:140313745..140316717-chr3:140320885..140322798,2	K562	blood:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs13315403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13316563	1.00[AMR][1000 genomes]
rs13433760	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13433933	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1389812	0.91[YRI][hapmap];0.85[AFR][1000 genomes]
rs1389813	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1561766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1567642	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1827168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1827169	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2119726	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2165583	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs28567961	1.00[AMR][1000 genomes]
rs28569452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28803908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56287987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57787093	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58002592	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58071968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58294993	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59844814	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60240007	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60887734	1.00[AMR][1000 genomes]
rs61598941	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61673653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6439937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6763286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766452	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773423	0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6790926	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6798999	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6803694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806640	1.00[AMR][1000 genomes]
rs72979237	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72979242	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72979243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72979250	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72979253	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72981933	1.00[AMR][1000 genomes]
rs72981959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7430829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7432960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7627138	1.00[AMR][1000 genomes]
rs7639139	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7649377	1.00[AMR][1000 genomes]
rs7651804	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9289605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9289606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9808968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9813212	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9813825	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9822864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9823422	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9827955	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9828653	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9828789	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830692	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9830840	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9834822	0.83[AMR][1000 genomes]
rs9840918	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9841078	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9844923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9844924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9857931	1.00[AMR][1000 genomes]
rs9865529	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9865940	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9868284	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9869402	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9870785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872697	1.00[AMR][1000 genomes]
rs9877773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9879413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9882754	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9883666	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	esv34489	chr3:140009020-140469302	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2757012	chr3:140009220-140460228	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv870185	chr3:140265153-140395673	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv877546	chr3:140299603-140468370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140310600-140325400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:140321200-140322200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr3:140321400-140322200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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