Variant report

Variant	rs10096189
Chromosome Location	chr8:11588439-11588440
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:11587892..11588820-chr8:11603814..11604865,11	MCF-7	breast:
2	chr8:11587880..11588754-chr8:26059609..26060454,2	MCF-7	breast:
3	chr8:11297376..11298167-chr8:11588230..11588817,3	MCF-7	breast:
4	chr8:11570409..11571041-chr8:11587922..11588483,3	MCF-7	breast:
5	chr8:11432773..11433729-chr8:11587844..11588900,10	MCF-7	breast:
6	chr8:11432740..11433872-chr8:11587844..11588900,23	MCF-7	breast:
7	chr8:11587913..11588721-chr8:11635440..11636177,4	MCF-7	breast:
8	chr8:11488454..11489748-chr8:11587903..11588890,4	MCF-7	breast:
9	chr8:11362531..11363443-chr8:11587841..11588799,2	MCF-7	breast:
10	chr8:11488454..11489748-chr8:11587903..11588890,8	MCF-7	breast:
11	chr8:11587850..11588855-chr8:11603787..11604777,28	MCF-7	breast:
12	chr8:11587278..11590197-chr8:11605996..11608000,2	MCF-7	breast:
13	chr8:11587887..11588889-chr8:11603840..11604789,8	MCF-7	breast:
14	chr8:11462808..11463594-chr8:11587916..11588873,3	MCF-7	breast:
15	chr8:11528163..11528738-chr8:11587874..11588807,3	MCF-7	breast:
16	chr8:11576572..11577288-chr8:11587875..11588770,5	MCF-7	breast:
17	chr8:11570475..11571255-chr8:11587947..11588507,3	MCF-7	breast:
18	chr8:11587952..11589513-chr8:11592423..11595406,2	K562	blood:
19	chr8:11430122..11430693-chr8:11587796..11588653,2	MCF-7	breast:
20	chr8:11432809..11433827-chr8:11587933..11588820,9	MCF-7	breast:
21	chr8:11576250..11577120-chr8:11588183..11588784,3	MCF-7	breast:
22	chr8:11446527..11447418-chr8:11587991..11588812,3	MCF-7	breast:
23	chr8:11428917..11429796-chr8:11587902..11588451,3	MCF-7	breast:
24	chr8:11587881..11588495-chr8:17186901..17187476,2	MCF-7	breast:
25	chr8:11576614..11577288-chr8:11587891..11588770,3	MCF-7	breast:
26	chr8:11587913..11588513-chr8:11635440..11636177,3	MCF-7	breast:
27	chr8:11528163..11528723-chr8:11588032..11588807,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000170983	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10090884	1.00[CEU][hapmap];0.90[AMR][1000 genomes]
rs11250159	0.95[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11989007	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17153694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153698	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs2001469	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2001470	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2898292	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57922664	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11582600-11589000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:11583200-11590600	Enhancers	Ovary	ovary
3	chr8:11585000-11591000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:11585600-11592400	Enhancers	Liver	Liver
5	chr8:11587200-11588800	Enhancers	Pancreas	Pancrea
6	chr8:11587200-11592400	Enhancers	Left Ventricle	heart
7	chr8:11587400-11591600	Enhancers	Right Atrium	heart
8	chr8:11587600-11589200	Genic enhancers	Fetal Intestine Small	intestine
9	chr8:11587600-11589600	Enhancers	Right Ventricle	heart
10	chr8:11588000-11591400	Enhancers	Fetal Heart	heart
11	chr8:11588200-11590000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:11588400-11588600	Enhancers	Gastric	stomach
13	chr8:11588400-11588600	Bivalent Enhancer	Lung	lung
14	chr8:11588400-11590200	Weak transcription	Stomach Mucosa	stomach
15	chr8:11588400-11593200	Weak transcription	HepG2	liver

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