Variant report

Variant	rs10096359
Chromosome Location	chr8:52283977-52283978
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28414196	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28696687	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58585006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59302046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6986369	0.93[ASW][hapmap];0.96[LWK][hapmap];0.89[MKK][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7005844	0.88[AFR][1000 genomes]
rs7006015	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7009718	0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52264200-52284200	Weak transcription	Right Ventricle	heart
2	chr8:52271800-52284200	Weak transcription	Left Ventricle	heart
3	chr8:52283000-52284400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:52283000-52289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:52283200-52284400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:52283800-52287400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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