Variant report

Variant	rs10097399
Chromosome Location	chr8:54263824-54263825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10093014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096135	1.00[AMR][1000 genomes]
rs10096343	1.00[AMR][1000 genomes]
rs10282757	1.00[AMR][1000 genomes]
rs28410741	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489408	1.00[AMR][1000 genomes]
rs28520344	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525488	1.00[AMR][1000 genomes]
rs28584883	0.86[AFR][1000 genomes]
rs56187209	1.00[AMR][1000 genomes]
rs59786462	1.00[AMR][1000 genomes]
rs6988309	1.00[AMR][1000 genomes]
rs6989250	1.00[AMR][1000 genomes]
rs6997390	1.00[AMR][1000 genomes]
rs73585645	1.00[AMR][1000 genomes]
rs73679705	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679727	1.00[AMR][1000 genomes]
rs73679728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679734	1.00[AMR][1000 genomes]
rs7839933	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv971652	chr8:54256830-54272294	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54257200-54265400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:54263400-54264200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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