Variant report

Variant	rs10098219
Chromosome Location	chr8:110981524-110981525
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16880206	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16880222	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16880283	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16880295	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2218815	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28719776	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28720015	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6997471	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7003810	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7012869	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs735913	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs746596	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822930	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7831509	0.89[EUR][1000 genomes]
rs7833678	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033321	chr8:110826297-111131801	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1019284	chr8:110866196-111221890	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv831421	chr8:110874634-111038295	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv6347	chr8:110978143-111023190	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:110977800-110986000	Weak transcription	Spleen	Spleen
2	chr8:110978000-110984400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr8:110979200-110983800	Weak transcription	Fetal Brain Male	brain
4	chr8:110981000-110983200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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