Variant report

Variant	rs10098498
Chromosome Location	chr8:89470353-89470354
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10087586	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091273	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092027	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10094621	0.88[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102914	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10105529	0.87[AFR][1000 genomes]
rs10108501	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110502	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10955601	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28665226	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28896612	0.88[AFR][1000 genomes]
rs9297471	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891172	chr8:89439469-89640705	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89468600-89470400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:89468800-89471000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:89470000-89470800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr8:89470200-89470400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:89470200-89470400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:89470200-89470400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:89470200-89470600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
8	chr8:89470200-89472000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr8:89470200-89472600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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