Variant report

Variant	rs10098563
Chromosome Location	chr8:95831273-95831274
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10096090	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10112232	0.80[ASN][1000 genomes]
rs10441538	0.80[EUR][1000 genomes]
rs1129152	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11996455	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12155666	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12546365	0.81[AMR][1000 genomes]
rs13271375	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13271644	0.81[EUR][1000 genomes]
rs3779789	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4075835	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4500055	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6991067	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7004862	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9643349	0.88[AMR][1000 genomes]
rs9650133	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10098563	TP53INP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95827400-95831400	Weak transcription	A549	lung
2	chr8:95827600-95834000	Weak transcription	HepG2	liver
3	chr8:95829200-95834800	Weak transcription	Right Atrium	heart
4	chr8:95831200-95831400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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