Variant report

Variant	rs10098586
Chromosome Location	chr8:103385739-103385740
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103383966..103386029-chr8:103390326..103392823,3	MCF-7	breast:
2	chr8:103383132..103388008-chr8:103389568..103392720,5	K562	blood:
3	chr8:103380392..103382334-chr8:103384411..103387288,2	MCF-7	breast:
4	chr8:103382240..103386598-chr8:103388176..103391903,4	K562	blood:
5	chr8:103385007..103388103-chr8:103392902..103395894,3	MCF-7	breast:
6	chr8:103375835..103378359-chr8:103385100..103386738,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10088255	0.85[CEU][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs10109588	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10505028	0.82[JPT][hapmap]
rs12114277	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13248227	0.87[ASW][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.93[LWK][hapmap];0.81[MKK][hapmap];0.88[YRI][hapmap]
rs13281324	0.82[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap]
rs16869377	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs16869423	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2293983	0.81[CHD][hapmap];0.82[JPT][hapmap]
rs2445948	0.84[EUR][1000 genomes]
rs2445949	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2445953	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2512408	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2512409	0.88[CEU][hapmap];0.82[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.91[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2512412	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2607658	0.84[GIH][hapmap];0.87[MEX][hapmap]
rs2607659	0.83[GIH][hapmap];0.83[MEX][hapmap]
rs2607662	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2853229	0.84[GIH][hapmap];0.87[MEX][hapmap]
rs2853233	1.00[CEU][hapmap];0.87[CHB][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2853236	0.83[CHB][hapmap]
rs2853238	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3018534	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35582203	0.82[EUR][1000 genomes]
rs36027049	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3736653	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs3931977	0.83[MEX][hapmap]
rs4269511	0.86[JPT][hapmap]
rs4495397	0.87[CHB][hapmap];0.83[CHD][hapmap]
rs4609174	0.81[CHD][hapmap]
rs4617126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4734619	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs6468826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6987733	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7001644	0.89[CEU][hapmap];0.86[EUR][1000 genomes]
rs7827839	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.98[TSI][hapmap];0.84[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
9	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103365400-103387800	Weak transcription	Stomach Mucosa	stomach
2	chr8:103365800-103387600	Weak transcription	Fetal Heart	heart
3	chr8:103369800-103421000	Weak transcription	Colonic Mucosa	Colon
4	chr8:103370000-103386000	Weak transcription	NHEK	skin
5	chr8:103371600-103387200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:103371600-103394400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:103372400-103388200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:103372400-103394200	Weak transcription	Thymus	Thymus
9	chr8:103372400-103395200	Weak transcription	Fetal Brain Female	brain
10	chr8:103372400-103412600	Weak transcription	Fetal Intestine Large	intestine
11	chr8:103372600-103393000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:103372600-103393200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:103372800-103387800	Weak transcription	HMEC	breast
14	chr8:103372800-103394200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:103372800-103394400	Weak transcription	Brain Germinal Matrix	brain
16	chr8:103372800-103403800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr8:103372800-103410200	Weak transcription	Fetal Kidney	kidney
18	chr8:103373000-103394400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr8:103373000-103395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:103373000-103395400	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:103373000-103402400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr8:103373200-103387600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:103373200-103401400	Weak transcription	Hela-S3	cervix
24	chr8:103373400-103387200	Weak transcription	Placenta	Placenta
25	chr8:103373400-103388000	Weak transcription	HSMM	muscle
26	chr8:103373400-103394200	Weak transcription	Primary T cells from cord blood	blood
27	chr8:103373400-103394200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr8:103373600-103394600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr8:103374400-103386600	Weak transcription	Dnd41	blood
30	chr8:103376600-103388000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr8:103377600-103387200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:103379800-103387800	Weak transcription	Brain Substantia Nigra	brain
33	chr8:103379800-103387800	Weak transcription	Fetal Lung	lung
34	chr8:103380200-103386000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr8:103380200-103393200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr8:103380200-103397800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr8:103380800-103386000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr8:103380800-103387600	Weak transcription	Liver	Liver
39	chr8:103380800-103387800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:103380800-103387800	Weak transcription	Spleen	Spleen
41	chr8:103380800-103387800	Weak transcription	NHDF-Ad	bronchial
42	chr8:103380800-103390800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:103381000-103386000	Weak transcription	K562	blood
44	chr8:103381000-103386400	Weak transcription	Small Intestine	intestine
45	chr8:103381000-103386400	Weak transcription	NHLF	lung
46	chr8:103381000-103386600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:103381000-103386800	Weak transcription	Adipose Nuclei	Adipose
48	chr8:103381000-103387000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:103381000-103387000	Weak transcription	Osteobl	bone
50	chr8:103381000-103387200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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