Variant report

Variant	rs10098795
Chromosome Location	chr8:118861893-118861894
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10089630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110445	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10156308	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12676684	0.83[CEU][hapmap]
rs12677136	0.87[CEU][hapmap]
rs12680472	0.87[CEU][hapmap]
rs17430266	0.96[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17430315	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17430357	0.94[CEU][hapmap]
rs17430364	0.94[CEU][hapmap]
rs17439833	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17474902	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28357257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4129114	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019636	chr8:118598433-118946091	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539734	chr8:118598433-118946091	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv831439	chr8:118747352-118899118	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv933516	chr8:118764605-119009093	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1030459	chr8:118840179-119155835	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:118849600-118865800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:118855800-118862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:118855800-118866200	Weak transcription	Liver	Liver
4	chr8:118857600-118862600	Weak transcription	Stomach Mucosa	stomach
5	chr8:118857600-118865800	Weak transcription	Fetal Intestine Small	intestine
6	chr8:118858000-118863600	Enhancers	Fetal Heart	heart
7	chr8:118858200-118862200	Weak transcription	Small Intestine	intestine
8	chr8:118858400-118863400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:118858600-118863600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:118858800-118863400	Enhancers	HSMM	muscle
11	chr8:118858800-118863800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:118858800-118864000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:118858800-118865200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:118859000-118864600	Enhancers	Osteobl	bone
15	chr8:118859200-118862400	Enhancers	NHDF-Ad	bronchial
16	chr8:118859200-118862600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:118859200-118863400	Enhancers	NH-A	brain
18	chr8:118859400-118863400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:118859400-118863600	Enhancers	Fetal Muscle Leg	muscle
20	chr8:118859600-118864000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:118859600-118864200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:118859800-118862200	Enhancers	Rectal Smooth Muscle	rectum
23	chr8:118860000-118863400	Enhancers	Fetal Lung	lung
24	chr8:118860200-118862000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:118860200-118862200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr8:118860400-118862400	Enhancers	Stomach Smooth Muscle	stomach
27	chr8:118860600-118864200	Enhancers	NHEK	skin
28	chr8:118860800-118862200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:118860800-118863000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:118860800-118864000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:118860800-118866000	Weak transcription	Fetal Intestine Large	intestine
32	chr8:118860800-118866200	Weak transcription	Ovary	ovary
33	chr8:118860800-118874800	Weak transcription	Lung	lung
34	chr8:118861000-118863000	Weak transcription	HMEC	breast
35	chr8:118861000-118874200	Weak transcription	A549	lung
36	chr8:118861200-118862200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:118861200-118862200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:118861200-118862200	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr8:118861200-118875000	Weak transcription	Right Ventricle	heart
40	chr8:118861400-118862400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr8:118861400-118862600	Weak transcription	Psoas Muscle	Psoas
42	chr8:118861400-118863200	Enhancers	Fetal Stomach	stomach
43	chr8:118861400-118864000	Weak transcription	Right Atrium	heart
44	chr8:118861400-118872400	Weak transcription	Aorta	Aorta
45	chr8:118861400-118878600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr8:118861600-118862000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr8:118861600-118862800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr8:118861600-118862800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr8:118861600-118863000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:118861600-118863200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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