Variant report

Variant	rs10098836
Chromosome Location	chr8:54278404-54278405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10086594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10086698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096135	0.84[AFR][1000 genomes]
rs10096343	0.84[AFR][1000 genomes]
rs28489408	0.84[AFR][1000 genomes]
rs28706575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679736	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7839933	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016224	chr8:53719941-54367534	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv530534	chr8:53787984-54367353	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3377304	chr8:53873441-54380875	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54274200-54278800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:54274400-54278800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:54275400-54281200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:54277600-54278600	Enhancers	GM12878-XiMat	blood
5	chr8:54278200-54278600	Enhancers	Colon Smooth Muscle	Colon
6	chr8:54278200-54278600	Enhancers	Fetal Brain Female	brain
7	chr8:54278200-54279000	Enhancers	Hela-S3	cervix
8	chr8:54278200-54279400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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