Variant report

Variant	rs10099103
Chromosome Location	chr8:125285808-125285809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10089870	0.82[EUR][1000 genomes]
rs13439443	0.83[EUR][1000 genomes]
rs28371029	0.90[EUR][1000 genomes]
rs4871483	0.90[EUR][1000 genomes]
rs55932688	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56218959	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56234976	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6983392	0.82[EUR][1000 genomes]
rs6988141	0.82[EUR][1000 genomes]
rs7003238	0.82[EUR][1000 genomes]
rs73330303	0.83[EUR][1000 genomes]
rs73330304	0.83[EUR][1000 genomes]
rs73345172	0.81[EUR][1000 genomes]
rs73345176	0.82[EUR][1000 genomes]
rs73345185	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762769	chr8:125167256-125480574	Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10099103	RP11-383J24.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125274800-125287400	Weak transcription	Fetal Brain Male	brain
2	chr8:125284400-125286800	Weak transcription	HSMMtube	muscle
3	chr8:125284600-125290200	Weak transcription	Psoas Muscle	Psoas
4	chr8:125285000-125286200	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:125285400-125286600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:125285400-125287000	Enhancers	Hela-S3	cervix
7	chr8:125285600-125286200	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links