Variant report

Variant	rs10099506
Chromosome Location	chr8:120279638-120279639
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120278648..120281614-chr8:120282840..120285748,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10085996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10096057	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10106870	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11985660	1.00[AMR][1000 genomes]
rs11996164	1.00[AMR][1000 genomes]
rs16892250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892252	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16892295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893931	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28431156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28488659	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28581955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28687971	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28880939	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28886608	0.87[AFR][1000 genomes]
rs6981519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996734	0.96[AFR][1000 genomes]
rs6996747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014726	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7015572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7357395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7357442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7357534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824695	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120277000-120281600	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:120279600-120280000	Enhancers	Fetal Intestine Small	intestine

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