Variant report

Variant	rs10099531
Chromosome Location	chr8:49551946-49551947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10957183	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12542549	0.83[AMR][1000 genomes]
rs1473441	0.87[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs2128241	0.81[CHB][hapmap];0.83[AMR][1000 genomes]
rs62509321	0.81[ASN][1000 genomes]
rs62509354	0.80[ASN][1000 genomes]
rs62509355	0.87[EUR][1000 genomes]
rs7831800	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs900239	0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs900240	1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9650145	0.99[ASN][1000 genomes]
rs9650146	0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49534400-49556000	Weak transcription	Pancreas	Pancrea
2	chr8:49544400-49555400	Weak transcription	Osteobl	bone
3	chr8:49546600-49554400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49547400-49553400	Weak transcription	Fetal Lung	lung
5	chr8:49549400-49553400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:49550200-49555800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:49550400-49552000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:49550400-49552800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr8:49550400-49552800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:49550400-49554200	Weak transcription	Placenta	Placenta
11	chr8:49550400-49556000	Weak transcription	NH-A	brain
12	chr8:49550800-49553000	Weak transcription	NHEK	skin
13	chr8:49551200-49552200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:49551200-49560800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:49551200-49563400	Enhancers	Ovary	ovary
16	chr8:49551400-49553000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:49551400-49553000	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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