Variant report

Variant	rs10099605
Chromosome Location	chr8:119346119-119346120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119341376..119343834-chr8:119345796..119348597,3	MCF-7	breast:
2	chr8:119344779..119346281-chr8:119346898..119348552,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10086371	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10095542	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10095830	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10110489	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28399719	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28614042	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1015380	chr8:118948652-119418389	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539736	chr8:118948652-119418389	Flanking Active TSS Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1016379	chr8:119164234-119448910	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv831442	chr8:119181675-119390122	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119323000-119357600	Weak transcription	Aorta	Aorta
2	chr8:119323000-119394000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:119323800-119362400	Weak transcription	GM12878-XiMat	blood
4	chr8:119330800-119361000	Weak transcription	Pancreas	Pancrea
5	chr8:119338000-119348000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:119343600-119346400	Enhancers	NHDF-Ad	bronchial
7	chr8:119343800-119346200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:119343800-119346200	Enhancers	NHLF	lung
9	chr8:119344000-119366000	Weak transcription	Gastric	stomach
10	chr8:119344200-119346200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:119344400-119346600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:119344600-119346200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:119344600-119346200	Enhancers	Spleen	Spleen
14	chr8:119344600-119346200	Enhancers	HMEC	breast
15	chr8:119344800-119346200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:119344800-119346200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr8:119344800-119346200	Enhancers	Right Atrium	heart
18	chr8:119345000-119351800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:119345200-119346200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:119345400-119346600	Enhancers	HUVEC	blood vessel
21	chr8:119345600-119346200	Enhancers	Osteobl	bone
22	chr8:119345600-119346600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:119345600-119346800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:119345600-119351600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr8:119345600-119355800	Weak transcription	Hela-S3	cervix
26	chr8:119345800-119346200	Weak transcription	A549	lung
27	chr8:119345800-119346600	Enhancers	NHEK	skin
28	chr8:119345800-119349600	Weak transcription	HSMMtube	muscle
29	chr8:119346000-119346400	Enhancers	Lung	lung
30	chr8:119346000-119351200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:119346000-119353200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr8:119346000-119353200	Weak transcription	NH-A	brain
33	chr8:119346000-119365800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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