Variant report
| Variant | rs10099699 |
|---|---|
| Chromosome Location | chr8:52260380-52260381 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10091690 | 0.89[AFR][1000 genomes] |
| rs10099560 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10110031 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11774588 | 0.83[AFR][1000 genomes] |
| rs11775272 | 0.83[AFR][1000 genomes] |
| rs1550235 | 1.00[EUR][1000 genomes] |
| rs16915981 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916019 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916021 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916023 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916024 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916051 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16916053 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17176316 | 0.96[AFR][1000 genomes] |
| rs6982243 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6984835 | 1.00[EUR][1000 genomes] |
| rs6985145 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6985579 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6986409 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6986594 | 1.00[EUR][1000 genomes] |
| rs6988739 | 1.00[EUR][1000 genomes] |
| rs6991317 | 1.00[EUR][1000 genomes] |
| rs6992306 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6993031 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6996727 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7005870 | 0.94[AFR][1000 genomes] |
| rs7818297 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932026 | chr8:51858658-52758574 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv948338 | chr8:52060314-52368754 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv890895 | chr8:52190571-52615191 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv817615 | chr8:52252405-53023384 | Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:52259400-52261600 | Weak transcription | Left Ventricle | heart |
| 2 | chr8:52259400-52261800 | Weak transcription | Right Atrium | heart |
