Variant report

Variant	rs10101661
Chromosome Location	chr8:11593504-11593505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:11587952..11589513-chr8:11592423..11595406,2	K562	blood:
2	chr8:11583078..11587577-chr8:11589128..11594677,6	K562	blood:
3	chr8:11591235..11593958-chr8:11596289..11599028,2	K562	blood:
4	chr8:11591065..11593958-chr8:11596215..11599028,3	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10086064	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13278982	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1390950	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2409806	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4613960	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840579	0.80[EUR][1000 genomes]
rs66494852	0.82[EUR][1000 genomes]
rs6986736	0.93[EUR][1000 genomes]
rs6992190	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv917963	chr8:11540723-11751798	Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1027378	chr8:11541739-11858466	Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1028229	chr8:11575762-11805961	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv539475	chr8:11575762-11805961	Flanking Active TSS Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv428514	chr8:11580381-11765706	Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv916483	chr8:11590294-11672038	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11590400-11593800	Weak transcription	Pancreas	Pancrea
2	chr8:11590400-11594000	Weak transcription	Gastric	stomach
3	chr8:11591200-11594200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:11591600-11593600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:11591600-11593600	Weak transcription	Stomach Mucosa	stomach
6	chr8:11591600-11594000	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:11591600-11594000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:11591800-11597400	Enhancers	Fetal Heart	heart
9	chr8:11592000-11593600	Weak transcription	Ovary	ovary
10	chr8:11592400-11593600	Weak transcription	Liver	Liver
11	chr8:11592400-11593600	Weak transcription	Left Ventricle	heart
12	chr8:11592400-11593800	Weak transcription	Right Ventricle	heart
13	chr8:11592800-11593600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:11593400-11593600	Enhancers	Right Atrium	heart
15	chr8:11593400-11593800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
16	chr8:11593400-11594000	Flanking Active TSS	HepG2	liver
17	chr8:11593400-11594200	Active TSS	A549	lung
18	chr8:11593400-11594600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr8:11593400-11595200	Enhancers	Fetal Intestine Large	intestine
20	chr8:11593400-11597800	Enhancers	Placenta	Placenta
21	chr8:11593400-11601400	Genic enhancers	Fetal Intestine Small	intestine

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