Variant report

Variant	rs1010225
Chromosome Location	chr1:154792825-154792826
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:154790416..154792846-chr1:154792950..154795333,2	MCF-7	breast:
2	chr1:154792210..154794358-chr1:154794481..154796259,2	MCF-7	breast:
3	chr1:154783206..154790651-chr1:154790786..154795764,8	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1218551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1218552	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1218553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1218598	0.87[CEU][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1218603	0.83[CEU][hapmap]
rs1702180	1.00[YRI][hapmap]
rs2798604	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
3	nsv427797	chr1:154559115-154933717	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv470740	chr1:154568683-154796895	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv464050	chr1:154568683-154801247	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv547958	chr1:154568683-154801247	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154786200-154794800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr1:154786600-154794000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:154786600-154801800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:154786800-154795200	Weak transcription	Brain Hippocampus Middle	brain
5	chr1:154787000-154794800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:154787000-154795600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:154787000-154800400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:154787000-154805400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:154787200-154794600	Weak transcription	Brain Germinal Matrix	brain
10	chr1:154787200-154795200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr1:154787400-154795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:154789600-154794800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:154790400-154794400	Strong transcription	Fetal Brain Female	brain
14	chr1:154790800-154794400	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr1:154791000-154793600	Enhancers	Primary B cells from peripheral blood	blood
16	chr1:154791400-154793800	Genic enhancers	Fetal Muscle Leg	muscle
17	chr1:154791400-154794200	Genic enhancers	Fetal Muscle Trunk	muscle
18	chr1:154791400-154794400	Weak transcription	HSMMtube	muscle
19	chr1:154791600-154793400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr1:154791800-154794600	Genic enhancers	Fetal Stomach	stomach
21	chr1:154792200-154793000	Enhancers	Primary T cells fromperipheralblood	blood
22	chr1:154792200-154793400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr1:154792200-154793400	Enhancers	Stomach Smooth Muscle	stomach
24	chr1:154792200-154793600	Enhancers	Spleen	Spleen
25	chr1:154792200-154794200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:154792200-154794800	Genic enhancers	GM12878-XiMat	blood
27	chr1:154792200-154796000	Enhancers	Colon Smooth Muscle	Colon
28	chr1:154792400-154793600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr1:154792400-154794600	Enhancers	Right Ventricle	heart
30	chr1:154792400-154795200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:154792400-154795200	Weak transcription	Brain Anterior Caudate	brain
32	chr1:154792600-154793200	Enhancers	Psoas Muscle	Psoas
33	chr1:154792600-154793400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr1:154792600-154793400	Enhancers	Lung	lung
35	chr1:154792600-154794800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:154792600-154795000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:154792800-154793200	Weak transcription	Right Atrium	heart
38	chr1:154792800-154794600	Weak transcription	Colonic Mucosa	Colon
39	chr1:154792800-154800200	Weak transcription	Gastric	stomach
40	chr1:154792800-154805800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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