Variant report

Variant	rs10102575
Chromosome Location	chr8:125818077-125818078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs4871542	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4871549	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs55802810	0.81[EUR][1000 genomes]
rs55838030	0.81[EUR][1000 genomes]
rs55861013	0.81[EUR][1000 genomes]
rs55875518	0.81[EUR][1000 genomes]
rs55880902	0.81[EUR][1000 genomes]
rs56260476	0.81[EUR][1000 genomes]
rs56291233	0.81[EUR][1000 genomes]
rs56325389	0.81[EUR][1000 genomes]
rs59002304	0.81[EUR][1000 genomes]
rs59042751	0.82[EUR][1000 genomes]
rs60947347	0.81[EUR][1000 genomes]
rs6997272	0.96[AFR][1000 genomes]
rs73704411	0.81[EUR][1000 genomes]
rs73704412	0.81[EUR][1000 genomes]
rs73704435	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125811400-125820600	Weak transcription	Lung	lung
2	chr8:125813800-125822400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:125815600-125819400	Weak transcription	HSMMtube	muscle
4	chr8:125815600-125820200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:125815600-125820200	Weak transcription	Osteobl	bone
6	chr8:125815600-125821400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:125815800-125818600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:125815800-125818600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr8:125815800-125820000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:125815800-125820600	Weak transcription	Left Ventricle	heart
11	chr8:125816800-125820200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:125816800-125820600	Weak transcription	K562	blood
13	chr8:125817800-125818200	Enhancers	Brain Hippocampus Middle	brain
14	chr8:125818000-125818800	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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