Variant report

Variant	rs10103461
Chromosome Location	chr8:6398472-6398473
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:6393677..6395465-chr8:6397894..6400469,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10088229	0.85[AFR][1000 genomes]
rs10099687	0.89[YRI][hapmap];0.93[AFR][1000 genomes]
rs725441	1.00[CHB][hapmap]
rs73507154	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890034	chr8:5926632-6427868	Enhancers Strong transcription Active TSS Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1021175	chr8:5965453-6880364	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1027682	chr8:6018123-6920312	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3506199	chr8:6116693-6536592	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	esv3506200	chr8:6116693-6536592	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv933282	chr8:6261036-6440592	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015981	chr8:6286575-6578450	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1027313	chr8:6286575-6920312	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv890057	chr8:6317165-6427868	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1021684	chr8:6350091-6809455	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
11	nsv1022895	chr8:6355213-6414874	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv933260	chr8:6357124-6410013	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv2422383	chr8:6362389-6781593	Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv933371	chr8:6389824-6399925	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:6342400-6421400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr8:6345800-6402400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:6364200-6417200	Weak transcription	Fetal Kidney	kidney
4	chr8:6364200-6478200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr8:6367200-6417000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr8:6370200-6400800	Weak transcription	Fetal Intestine Small	intestine
7	chr8:6370400-6400200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:6370400-6402600	Weak transcription	GM12878-XiMat	blood
9	chr8:6370400-6403000	Weak transcription	Primary B cells from cord blood	blood
10	chr8:6370400-6405000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:6373600-6420200	Weak transcription	Esophagus	oesophagus
12	chr8:6374800-6408800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:6375200-6404400	Weak transcription	NHEK	skin
14	chr8:6377400-6398600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:6377400-6400800	Weak transcription	Thymus	Thymus
16	chr8:6377400-6405600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:6377400-6414600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:6386200-6417400	Weak transcription	Pancreas	Pancrea
19	chr8:6386800-6405800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr8:6387000-6403800	Weak transcription	Primary T cells from cord blood	blood
21	chr8:6390000-6402200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:6390400-6403400	Weak transcription	Dnd41	blood
23	chr8:6390400-6404400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:6390400-6405000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr8:6390400-6407000	Weak transcription	Gastric	stomach
26	chr8:6391600-6416400	Weak transcription	Primary B cells from peripheral blood	blood
27	chr8:6392400-6402600	Weak transcription	HSMMtube	muscle
28	chr8:6393200-6400000	Weak transcription	Fetal Lung	lung
29	chr8:6394800-6403600	Weak transcription	Psoas Muscle	Psoas
30	chr8:6395000-6401000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:6395000-6403200	Weak transcription	Brain Angular Gyrus	brain
32	chr8:6395800-6399000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr8:6396200-6400000	Weak transcription	Ovary	ovary
34	chr8:6396600-6404400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr8:6397000-6399600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:6397000-6400000	Weak transcription	Aorta	Aorta
37	chr8:6397000-6404400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr8:6397200-6399800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr8:6397600-6399000	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr8:6397600-6400200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:6397600-6400200	Enhancers	NHDF-Ad	bronchial
42	chr8:6397800-6398600	Enhancers	Adipose Nuclei	Adipose
43	chr8:6397800-6399000	Enhancers	Brain Hippocampus Middle	brain
44	chr8:6397800-6399000	Enhancers	NHLF	lung
45	chr8:6397800-6400400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr8:6397800-6400800	Enhancers	Fetal Muscle Leg	muscle
47	chr8:6398000-6398800	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr8:6398000-6398800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr8:6398000-6398800	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr8:6398000-6398800	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links