Variant report

Variant	rs10103462
Chromosome Location	chr8:116233760-116233761
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10046778	1.00[AFR][1000 genomes]
rs28404244	1.00[AFR][1000 genomes]
rs28678814	1.00[AFR][1000 genomes]
rs28718830	1.00[AFR][1000 genomes]
rs28804525	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831431	chr8:116209344-116402304	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1024074	chr8:116211511-116387442	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116230200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:116230400-116236000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:116230600-116235600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:116230600-116236000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:116231200-116234400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:116231200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:116231400-116234400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:116231400-116237600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr8:116231600-116234600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:116231600-116234600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:116231600-116234600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:116231800-116234400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr8:116232000-116234200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr8:116232000-116234200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr8:116232000-116234200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr8:116232000-116234600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr8:116232000-116235000	Weak transcription	Osteobl	bone
18	chr8:116232200-116233800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr8:116232200-116234000	Enhancers	GM12878-XiMat	blood
20	chr8:116232200-116234200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:116232400-116233800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr8:116232400-116234000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:116232600-116233800	Weak transcription	Dnd41	blood
24	chr8:116232800-116233800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr8:116233000-116234400	Weak transcription	Primary T cells from cord blood	blood
26	chr8:116233400-116234000	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:116233600-116233800	Enhancers	HUES6 Cell Line	embryonic stem cell

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