Variant report

Variant	rs10104199
Chromosome Location	chr8:3307484-3307485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10282915	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11136626	0.85[EUR][1000 genomes]
rs11136629	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs11781112	0.95[EUR][1000 genomes]
rs1550894	1.00[ASW][hapmap];0.80[CEU][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2173585	0.87[EUR][1000 genomes]
rs2654484	0.81[GIH][hapmap]
rs270071	0.85[CHB][hapmap]
rs270074	0.85[CHB][hapmap];0.87[MEX][hapmap];0.92[TSI][hapmap]
rs270075	0.82[CHB][hapmap]
rs270080	0.88[CEU][hapmap]
rs270082	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs270087	0.87[CEU][hapmap]
rs270088	0.88[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs4609217	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs4875707	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4875708	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6558768	0.85[EUR][1000 genomes]
rs6558771	0.80[EUR][1000 genomes]
rs6985255	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6986297	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[EUR][1000 genomes]
rs6987242	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6987378	1.00[CHB][hapmap];0.82[GIH][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs6991036	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6997821	0.97[EUR][1000 genomes]
rs7002311	0.95[EUR][1000 genomes]
rs7005833	0.87[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs7007616	0.86[ASN][1000 genomes]
rs7007801	1.00[ASW][hapmap];0.81[CEU][hapmap];0.86[GIH][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs71513015	0.87[EUR][1000 genomes]
rs7464854	1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs7818982	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7829788	0.88[EUR][1000 genomes]
rs7834776	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025209	chr8:3067655-3754882	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026998	chr8:3102679-3593264	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034076	chr8:3168033-3989947	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539351	chr8:3168033-3989947	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017164	chr8:3174168-4026811	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv539352	chr8:3174168-4026811	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1018218	chr8:3180287-4089011	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1034838	chr8:3307014-3413573	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:3295000-3320200	Weak transcription	Brain Substantia Nigra	brain

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